YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23879
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	62	0.87
Non-Cytoplasmic	63	90	0.93
Transmembrane Helix	91	111	0.95
Cytoplasmic	112	118	0.79
Transmembrane Helix	119	139	0.92
Non-Cytoplasmic	140	149	0.72
Transmembrane Helix	150	171	0.86
Cytoplasmic	172	177	0.77
Transmembrane Helix	178	199	0.89
Non-Cytoplasmic	200	210	0.82
Transmembrane Helix	211	230	0.95
Cytoplasmic	231	274	0.93
Transmembrane Helix	275	294	0.93
Non-Cytoplasmic	295	310	0.81
Transmembrane Helix	311	330	0.89
Cytoplasmic	331	344	0.96
Transmembrane Helix	345	366	0.91
Non-Cytoplasmic	367	373	0.82
Transmembrane Helix	374	396	0.88
Cytoplasmic	397	408	0.83
Transmembrane Helix	409	430	0.90
Non-Cytoplasmic	431	440	0.77
Transmembrane Helix	441	462	0.92
Cytoplasmic	463	487	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAPEKKPP IPVVITAEQM SSEAKENGLE PSSSKIRYIV LILSMTCLSF MMSNVICFNF  60
   61 TVLCMPGTGE SSELTGNKTQ YIGYNRQEKT WLFSTVAVGA MFGLFPVIIG ISTYGLRKVF 120
  121 FAAGMLTSLT TFLIPIVAPM DFNLFLLMRF LQGMSYAGCM PAVGAITSSW ASLTQQGLFI 180
  181 AALTTFGQLS SIFSMPIAGE LCVSPFGWKS VYFLHAAISM VIFLAWFAVF TDSPSTNKLV 240
  241 KSTELLEIQK GKSDAAANGK QEATPYLEIL TTPSVWGIWI GALGDLIAVQ LIHIYSPVYL 300
  301 HDIGGYSVEK TGFAAAVPVL FQFFMKLFAG HSSDRISGIS ETTKLRIYNT IALGASAVFL 360
  361 AALGFVKEGQ GLTGLTLMTV ATAMFGFNGG GFIKCAALVS RQHNHFVMAN VQFLLCLSML 420
  421 LCPILVSFLL RHGTITEWRL VFFVHAGILA ACNLIFCLLA TAKPAPWTDR TLKPSASRNT 480
  481 PLYTIKY