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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ldb-1
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVVIFLKFL FSDNGNNQHG TEAAFGRLAQ SYRIQDLLFI IVIFFRAIHI MMFHRPPSAR  60
   61 PPLNHVDQLK SLQATALGKP GMRSQATEPQ PIGNTVSPLE FRIHDMNRRL YIFSSTGVSE 120
  121 NDQQQWWDAF SHEFFDDDCK LWFVIGSEPV AFASRERYII NRQFIPKFFR SIFDSGMREL 180
  181 QYVLRGPSRE CTLANGSQAY ENENVLQITR YDQSSQFEVN TEGKLYVEFA PFDEVMNYRI 240
  241 KAWTLELKRS NEFVYNQNTA DYRVEAQNPE QENKPRMGFF KSTFNLMTML KILDPMQSIM 300
  301 SSAKSAPAIT PREVMKRTLF QHHQVRQQNM RQQQLNQQMM IPAPEPEKPK PARKRQRKPA 360
  361 ANPRGSKKAT AAAAAAAAAA TNGVPPTVPT ASPANNQQFP PNPMTSQFQQ MSYPDVMVVG 420
  421 EPSMMGSEFG ENDERTISRV ENSQYDPNAM QMQSLGQGPN SSMNINGRNM MNQHHPGMQP 480
  481 PPGQQHMPPH SMGSQMPTSM HNPMHMPPGS MQGHGGMPPM PSTMANQMPP PNLPPHTMSN 540
  541 QMPNSRMPPM QGQMPPSGMP GQMSNPNMMG SGMPPMSMSS QMPGSMSNPM PNQMPGGMQM 600
  601 NQMPPPNYSQ YTGGPPPQWP PPNSAMITG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle