YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23773
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.84
Transmembrane Helix	28	48	0.86
Non-Cytoplasmic	49	124	0.82
Transmembrane Helix	125	145	0.94
Cytoplasmic	146	154	0.64
Transmembrane Helix	155	177	0.87
Non-Cytoplasmic	178	183	0.69
Transmembrane Helix	184	205	0.91
Cytoplasmic	206	212	0.75
Transmembrane Helix	213	235	0.85
Non-Cytoplasmic	236	243	0.79
Transmembrane Helix	244	264	0.95
Cytoplasmic	265	319	0.88
Transmembrane Helix	320	340	0.86
Non-Cytoplasmic	341	373	0.88
Transmembrane Helix	374	396	0.92
Cytoplasmic	397	404	0.75
Transmembrane Helix	405	426	0.91
Non-Cytoplasmic	427	432	0.71
Transmembrane Helix	433	454	0.88
Cytoplasmic	455	461	0.87
Transmembrane Helix	462	484	0.90
Non-Cytoplasmic	485	492	0.84
Transmembrane Helix	493	513	0.95
Cytoplasmic	514	535	0.93
Transmembrane Helix	536	560	0.83
Non-Cytoplasmic	561	580	0.85
Transmembrane Helix	581	600	0.92
Cytoplasmic	601	614	0.91
Transmembrane Helix	615	635	0.96
Non-Cytoplasmic	636	643	0.69
Transmembrane Helix	644	664	0.92
Cytoplasmic	665	673	0.80
Transmembrane Helix	674	697	0.88
Non-Cytoplasmic	698	705	0.86
Transmembrane Helix	706	728	0.93
Cytoplasmic	729	746	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDYKVHST LPHIPKTPSF AFWNRTRIYI MVLTLACLTF IQINTVIFNF TVICMEDIVE  60
   61 DYNLLTNYTG TPSTKALALS PTAHCSRRCA GPRVTTAVVG GRGTRGVRVS HFGTHWFQRT 120
  121 TEKSLLFSGA AIGGLIGLIP SVPLINSIGL RNFQTISGLI SALGALLFPL AVSIDFYSSF 180
  181 LCRVLQGMGS SIIFTSVGVV PGVWAPSNET NTFTAILSCA LQLGNIICMP VSGFLCESSL 240
  241 GWRSIYYLFG GLTAIIFIMF WFTYTDDPKL HRLTEIQILK IHFFGKNVSE NCEVHPTTSD 300
  301 GRLPKIRKTS SFVFWNKTRM FIMILTLACL TFIQINTLLF NFTVICMEDV VENYNLLTNY 360
  361 TATHWFQRNT EKSLLFSGVA IGGLIGLIPS VPLINALGLR NVQTISGLIS AFGALLFPLA 420
  421 VSIGFYTTLL CRILQGMGSA VMFTSVGVVP NVWAPRNEAN TFMAILSCAL QLSNIICMPV 480
  481 SGLLCESALG WRSIYYLFGG LTFIMFIVFW ISYKDDPKMY RKRNLKKSPA AKLSRYLAIC 540
  541 TDPTVLITWI TCFGGFVGLY SLSLYGPTYL REILKFDVRE TGFLSALPFI LSAIIKFAAG 600
  601 KISDKLSFLS EKSRFVFFAA TSQIGFVAGL LVMAFTTNRL IAQIAFNFAI VSSGMNVMGV 660
  661 FKVVQLRCLQ HVHFAIAVIS FTTYLVQFLA PVIVGIICPD NTPAQWTTLF LVISAIIIVC 720
  721 TVGFPFLTKS DAADYTKKKT VESCRS