YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	145	0.78
Transmembrane Helix	146	168	0.90
Non-Cytoplasmic	169	185	0.72
Transmembrane Helix	186	209	0.81
Cytoplasmic	210	262	0.77
Transmembrane Helix	263	285	0.85
Non-Cytoplasmic	286	290	0.57
Transmembrane Helix	291	310	0.77
Cytoplasmic	311	373	0.92
Transmembrane Helix	374	395	0.92
Non-Cytoplasmic	396	401	0.77
Transmembrane Helix	402	423	0.84
Cytoplasmic	424	746	0.99
Transmembrane Helix	747	768	0.89
Non-Cytoplasmic	769	809	0.94
Transmembrane Helix	810	832	0.90
Cytoplasmic	833	887	0.89
Transmembrane Helix	888	907	0.84
Non-Cytoplasmic	908	911	0.61
Transmembrane Helix	912	932	0.92
Cytoplasmic	933	993	0.96
Transmembrane Helix	994	1016	0.92
Non-Cytoplasmic	1017	1024	0.72
Transmembrane Helix	1025	1043	0.88
Cytoplasmic	1044	1400	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSDSEEVCL QQSGTGVYEN VVYSKETSDR AKRYAGDTNR KTIGRYSAAV QNLIPLRTTE  60
   61 RNKNNGGSRI DDAGLFSFVT YSWVFPYLYQ AVRGKLDRNQ VWGCSFYDSC GLNMARLEVL 120
  121 WEDEKKANAK SPSLFKVIYR FISTRLWFSC AVFFFCLIFG FIGPTCFIRR LIAFAENPER 180
  181 DEQSRIVYSY GIALVAAISV VEFARVLSYG ATWAVSYRTG IRVRGAVLAL LYKNVLNSKD 240
  241 LCGKTESDVI NIFANDGQRL FDAVTFAPLV LVGPLVLVGG IGYLLMVIGR WSLLGILVFF 300
  301 VFDVIQFGLG KSMVACRNLA IVKTEKRISM MAEIIKYIRI VKMNGWEQIF SAKIDQFRKE 360
  361 EKVQIRKSGY AQSLAIACGP VVPVVAAILT FVGVVLAGND LLASDAFSAI TVYFVMLFGI 420
  421 RMIPYGSRYL AEAVVAMRRI QEYLLLEQYA PYPVTNAEDV VLDCQGATYT YQPKAAKAPV 480
  481 DETKEPTENE VIVVETPVFT CSFDKLSIKR GEHIAVIGAV GCGKSAILKA ISGHMFTTDD 540
  541 ALSVDRSQTV YVPQKAWIFN GTVQDNILFG DKMNSERYYK AVNGCQLTED LTTLSVGDRT 600
  601 EVGERGATLS GGQKARVALA RAVFQTKNLY LFDDIFASLD KKLLHHFDRV LFVEGGNIVA 660
  661 DGNHDILYEK NDAYKTFVDA CETYQATSGA TSPCGDGPAQ PAPLDAEILR NSSEDLKGDA 720
  721 DKLISDEEDM GNSTIAWRIY KQYIHAAGGW PIWTCLVIGF IVNVVSNIFS TYWLSRWLKK 780
  781 GHDETTTITN GTEFLEMKTS LADSPVTGFY AAVYLVALVV LTISGLFKAC VFVKVSLTAA 840
  841 TRLHDRMFQA VIHGATSFFD STPTGRILNR FSKDMDEIDV KLPFTAEVFL QNMITCLGFL 900
  901 VVITSVFPYF LLFAIPLFVV FVVFVSCFRA GIRNLKRSEH ISRSPLYDHV SASLEGITTI 960
  961 HTFQQSNRFL EVLKKHLDCN SGAIFMFQSA MRWLAVWLDL LVVVMTAIVA LLTVMLTGTV1020
 1021 SPADAGMAIA FAVQMSGIFQ FAVRTQTELE AKMTSVERVS YYADNIPEDG EWNTRQGLDI1080
 1081 ESSWPANGQI NFSEVNLRYR KSHPLALNDI TFEIKGGEKV GIIGRTGSGK SSLANLIFRL1140
 1141 YPVTNGTIYI DGVDIRTVGL VKLRRGISAI AQDPSLFSGT VRFNLDPSLE YSDSMIWEAL1200
 1201 EKCHLKTLVQ SLDKKLEADV SHGGNNFSVG ERQLFCLARA LLMKSRIVIL DEATASVDAG1260
 1261 TDKLIQEVIK TVFADATVII IAHRLDNVRN MDRIMHLKNG KLINFTTPQE MFKDDWSVYK1320
 1321 LEDKDDDQHS AVVVGENSEH SMEKSSQGSS QESDDIVKVE NEQKDSSDDV VHIESGDDDV1380
 1381 KADSSEVKET SSDTDIEVVQ