YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23557
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIRAEYA ACQELKKLEN SSYNPGGCSV DFDKSLCWAS AHIGQQMTRD CPFTFCTAIP  60
   61 GCEEIKDRYM VSRNCNSMGV WQDSNYTMCI KVVEEYAQCL QGFCRVCPDV LRDLVISVSL 120
  121 TLSFVSVILL VAAIVLFSIF DSIQCRRLSI HKNLATAFVF RFAVLAIWTI VQTTNVFQDC 180
  181 TRLTPLPLWD YEWICKAILW FVIYFNVASV MWMLIEGAFL YSRFTVFAMR HSDAPWSLYL 240
  241 ACGWGVPFVV VTAWALVHQY ISSQQTNSFC WLPYAQGLHL WILAGTMGSA LIMNLIFLLM 300
  301 IVVILVQKLR TENSAESKKI WRTIKATLLL VPLLGISNIP LFYEPEHPSS VYMLGSAILQ 360
  361 HSQGIFIAVL YCFLNSEIQG ALKRQLSKVP FEFFKTRNRF ETERTYVPEA RNATKNGVPM 420
  421 EEMNKTKNIE SGENTESQDQ VSTGKQIYSV STKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	119	0.96
Transmembrane Helix	120	140	0.92
Cytoplasmic	141	153	0.77
Transmembrane Helix	154	172	0.87
Non-Cytoplasmic	173	196	0.85
Transmembrane Helix	197	215	0.94
Cytoplasmic	216	235	0.81
Transmembrane Helix	236	257	0.95
Non-Cytoplasmic	258	280	0.88
Transmembrane Helix	281	305	0.92
Cytoplasmic	306	322	0.91
Transmembrane Helix	323	343	0.92
Non-Cytoplasmic	344	356	0.76
Transmembrane Helix	357	374	0.93
Cytoplasmic	375	454	0.96