YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lag-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAYFLLLLT CLPVLQARVE VHQEFISSKR VSVRFEIVTE SHSPNRPVTF DLFPRGPKTN  60
   61 IILLDTFNPV FNFSIQLVQP FTGQPLGDRI YRKVQFSGTN QPWINDTFTT TSGISLSVAT 120
  121 EVTCARNYFG NRCENFCDAH LAKAARKRCD AMGRLRCDIG WMGPHCGQAV DPRKCSCEND 180
  181 GICVSSMIHP SQPNQTSSNE QLICECTNGF TGTRCEIFGF NQFQLTAPRP DACSVKDACL 240
  241 NGAKCFPNGP KVFCSCAVGF IGEFCEISLT TTTPTTVEIT VSTSGYSSAV YITVALFVIF 300
  301 SIIIGCFKYK FKPMRQQALA RGQVPEPYKM PETKSMLIDP EASEAQKKVF TIEGSVQKID 360
  361 EEVRYTSAPR KYESNNEYAV IQKSTPPPPS LSPPSIPACH YV

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	288	0.99
Transmembrane Helix	289	309	0.92
Cytoplasmic	310	402	0.98