YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pho-9
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYRLLFLYF SVVHAELEMV QVLVRHGDRA PSFTYPLDEF NVAEHFPRGY SQLTQRGFRQ  60
   61 AKEVGVFLRN QYKDLIDGFD RKETLIRSSD KDRCIETAMG ITQTLFPDDI VPVHTYSHYK 120
  121 HDLLLKPNSV RCRRVDELVN ADKSWLSAQV DIEHRDLFSL LSQKTGWHVT GSKISDVFNV 180
  181 LYRKHANGVA QPDWVNHVLA NVTELKRQYR SIQFNSDEKS KMRTGYLLGQ ITKDMVHREE 240
  241 TGRKMIVYAT HDATVTSMMY SLGVSDHQLI PYTAALIVEL HRLNGKSFVK VSLQLEVVKS 300
  301 TVGLGLGLSS DLGLGFGLGL GLGSGLSHMI GCGSGQGLGI GLGLILGTGL GLGLKLGFGL 360
  361 SHMIGFGSGQ GLGLGLGLGL GLDILNRSSP ESAPRELRLP GCDVLCPMET YQEFVSTRII 420
  421 SNKEEHDVIC QNFEAPEIEL PSQELPKNLP EEDHLFSTLI TVGSLSYDLY ANLKAKN

Type	Start	End	Confidence
Signal Peptide	1	15	0.85
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	301	0.93
Transmembrane Helix	302	323	0.84
Cytoplasmic	324	331	0.57
Transmembrane Helix	332	354	0.83
Non-Cytoplasmic	355	363	0.57
Transmembrane Helix	364	385	0.88
Cytoplasmic	386	477	0.89