YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAHSSEGLS ATAPVTGGDV LVDARASLEE KEAPRDVNAN TKQATTEEPR IQLPTVDAFR  60
   61 RAIPAHCFER DLVKSIRYLV QDFAALTILY FALPAFEYFG LFGYLVWNIF MGVFGFALFV 120
  121 VGHDCLHGSF SDNQNLNDFI GHIAFSPLFS PYFPWQKSHK LHHAFTNHID KDHGHVWIQD 180
  181 KDWEAMPSWK RWFNPIPFSG WLKWFPVYTL FGFCDGSHFW PYSSLFVRNS ERVQCVISGI 240
  241 CCCVCAYIAL TIAGSYSNWF WYYWVPLSFF GLMLVIVTYL QHVDDVAEVY EADEWSFVRG 300
  301 QTQTIDRYYG LGLDTTMHHI TDGHVAHHFF NKIPHYHLIE ATEGVKKVLE PLSDTQYGYK 360
  361 SQVNYDFFAR FLWFNYKLDY LVHKTAGIMQ FRTTLEEKAK AK

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	96	0.80
Non-Cytoplasmic	97	103	0.56
Transmembrane Helix	104	126	0.83
Cytoplasmic	127	135	0.73
Transmembrane Helix	136	155	0.68
Non-Cytoplasmic	156	201	0.82
Transmembrane Helix	202	222	0.80
Cytoplasmic	223	232	0.84
Transmembrane Helix	233	253	0.93
Non-Cytoplasmic	254	259	0.77
Transmembrane Helix	260	280	0.93
Cytoplasmic	281	402	0.94