YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abt-5
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.90
Non-Cytoplasmic	45	198	0.99
Transmembrane Helix	199	220	0.93
Cytoplasmic	221	238	0.79
Transmembrane Helix	239	263	0.73
Non-Cytoplasmic	264	271	0.83
Transmembrane Helix	272	294	0.89
Cytoplasmic	295	300	0.79
Transmembrane Helix	301	320	0.87
Non-Cytoplasmic	321	340	0.82
Transmembrane Helix	341	361	0.81
Cytoplasmic	362	370	0.78
Transmembrane Helix	371	392	0.93
Non-Cytoplasmic	393	847	0.87
Transmembrane Helix	848	867	0.76
Cytoplasmic	868	984	0.77
Transmembrane Helix	985	1006	0.82
Non-Cytoplasmic	1007	1037	0.65
Transmembrane Helix	1038	1063	0.79
Cytoplasmic	1064	1070	0.67
Transmembrane Helix	1071	1092	0.90
Non-Cytoplasmic	1093	1099	0.70
Transmembrane Helix	1100	1117	0.95
Cytoplasmic	1118	1135	0.67
Transmembrane Helix	1136	1155	0.83
Non-Cytoplasmic	1156	1177	0.87
Transmembrane Helix	1178	1204	0.82
Cytoplasmic	1205	1564	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKLLHLLQ KDVLLMRRSK VWTGFEVAIP LILIAFPAAV MIYAKSQAPE DAKSSGPSID  60
   61 MMLSTESFHP TVSSTCQDPS YGVQTVNNVE NYWNYSPMRW DNTTNSLDLA KNPARKLFIK 120
  121 DVRACKKIVY IVEDKYKTTM VLPAIGRRSY NFRSYNYYMN KIMFGLSQRA NNTSSIIENF 180
  181 DIKLYSITNF EESGFGQNFG LLFAVCMLMP VISVARALVV EKSSVKPYLT TIGLPLWMFY 240
  241 LEHFLFGVIK NTFLITLLST LYIFSMDNCP TYVLAGIFMY TCHCVSFSIL CTSILPFGKR 300
  301 IVEGMVIIWI TLIIAMHLSL EFEFDWLFWV PLLNPNYSLK LFVDATFLAS GPNGTPTSAL 360
  361 FSSKKKTLQS AAVYFGIMIS CTVVMLVAAI FMEKLYTFVG HAIFKRFWRI LGFSKGKRSK 420
  421 IEERGDGVED RSTILQCKET VEGRGSAIAD IELSGLVKVY QNGEKAVNGL SLRAIRGQVS 480
  481 ILLGHNGCGK STTFGMITGM HQATEGKVMI GGIDANANRA EARELIGYCP QYNPIYDELT 540
  541 VWEHLRLVNA LKGRSGGSDF KMDAESLLKQ IELTDKRNTL AKNLSGGMKR KLCVCMAMIG 600
  601 GSRVILLDEP TAGMDPSARI DVQNMLALVK ADRTILLTTH YMDEAEKLGD WIFVMSHGKM 660
  661 AASGSKHYLK QKYGGGMLLT LVFKSVHDPM RPRKSYETAY DVCKTVCSTA LVKDERGQMI 720
  721 EISILETEKS RLPTLLKILE SVMEEDYNNP EFQALEPDIQ EKCRTLELAT IGVSMSSLEQ 780
  781 VFIKIGDECD DIMNGTGVDK KTERQEKFST LVQYKIQQPK QGFSKLMMVV WALLQKRAYY 840
  841 LYRNPVQITL QIILPLLTLW LFAVPFLRLE PKPPKLSDIE SFDPSQYPHS TVLLQLENEN 900
  901 DDRLANYLNS FSNFEVVFKT LGFIVKVNKK GDSKFYKISQ GDKNAAILMN IIASAMYLRD 960
  961 PSVTKLPHVT SRVIWMNDPK IKYEGLASFF LFENIFFLLV LAGIFIQSTV YLIEEKICKF1020
 1021 AHQQYLTGLS TIAYWGVVFL WDFLLFTFFL LYTIGFLISF GVLQGHIHEI VVIFYGLLFY1080
 1081 FAPLVYLTSA LINTPTRGNF LLYMFCCIPW LAYSIVSELH NFPPIQKYSD EIEYGFRIFN1140
 1141 PSIGFLAGLM KIAALNYPKS GLDKHFEHLT NLWTYEGIFF ELMFLFFGGI FLTILLGCAT1200
 1201 LKPFRRACFR GTRRRSQPRE RKRYKGIESC KAVKEEEQLV QEVDKNETVL VIDGLVKDFG1260
 1261 KFRAVNDLSI SVGHEECFGM LGANGAGKTT TFDIITGLTM PTGGSATIDG HDITETIHIG1320
 1321 YCPQFDAMLQ QISCRQTLRI MAKLQGYPNV KEVVELVLDC VGMSDFGYKL VKNCSGGQKR1380
 1381 KISVGIALMS RATCIILDEP TAGIDPRARR EIWDIIHEMR EQAKCSIVLT SHSMEECEAL1440
 1441 CTRIGILRKG EMIALGTSQS LKSQYGNTYM MTLILNSLED LESVCVIVSE EMPDAVLKTP1500
 1501 ESSLTTSIVW ELPKSKSDKW SEKYNQVEVL AKKANAKDYM LTQASLEDTF IRLITTEEEE1560
 1561 EASA