YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wht-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNDILTPDD ALTEPAEQKT QSIRDDELLP DKTQPSTSKS KMKTAVENLK AEIVEDDINE  60
   61 AENRFLVDKT QQTISISQDF GVFEDIVKDS TVSKYCDRIL TWKGITVEEI KKKKDTLQGR 120
  121 ILDKVNGRAL AGELTFIMGS SGAGKTTLLN VLTGRNMDGL KIKGDVMMNG RSLSSSEMKQ 180
  181 LSAYVQQEDV FMSSQTVSEV LHFAVKMKSP ERLSTQKRAS LVDQMLTTFG LKTCEHTRIG 240
  241 SVKEKGISRG EKKRLAFACE ILTDPPILFC DEPTSGLDSF MSHQGKVAYE GSTKDVEGFL 300
  301 VKLGSPVPEL TSVSDHFIRV LSRSIAHAVV SICGDITMSL MVAPLISVPV MVFGGFLITV 360
  361 DAVPVYYLPL TYVSWYHYAF EAIMIAFFKD HGDIKGCDKP VITQFECSNG LKFISDQDFK 420
  421 VEHFWLDFIA VGAILLFWKL FGLLAFVVRI RRTT

Type	Start	End	Confidence
Cytoplasmic	1	331	0.51
Transmembrane Helix	332	366	0.69
Non-Cytoplasmic	367	427	0.88
Transmembrane Helix	428	448	0.91
Cytoplasmic	449	454	0.87