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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptr-17
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNHIILLP DSFKNSMIIS KIRAAPLEQP WANIVAKYCL FVAKYPWPFI IIPLIITICL  60
   61 SMGIILNFKI VRGVNYLYAP LNATWKTEEA VFGENWAKDD DHFYPGKDIL RRQGIYLIVN 120
  121 AKDGGNVLRQ EYAQDFLKIL DWILNVKLLS SAGRIFTYKD VCLHFQNDCF SNPHAKLLAN 180
  181 IYSKNHQNSM FNITYPIYRS TYATEPIDIS KVLGNVSLDY DGHVENASAW LILYQLKNEK 240
  241 WQLSRDFEDG LAEKIQSGEA PSELLNLYYF HSATFDQELE KENRRLTPKF SITFSVLIIF 300
  301 AIMTTFTIKF MKFKTENGIN QYPVIDWVLS KPLLGICGVL VTMCAIISST GLLMLFNVTF 360
  361 VDMCTVMPFL SLTIGIDDTF LMLAAWHETD RNLPYEKRIE KAMRHAAVSI SITSLTDALA 420
  421 FLIGSIAPLP AVIYFCYYSS AAILFIFLYV LTMFVAVLAL QGRREEDLKH SVTGMKTIDL 480
  481 DSDYETASTR QLLLKMGSRV SVKADEENNN NNNEKSIENI QKIDNRMWYQ RFFEDQYAPF 540
  541 ISNSKISILS FLIYLAYLAA AFYGVKHLKI GFDFVVTVVL TIKYKVLQLI NIVQEDSASR 600
  601 VFLEVREQLF PEDTKLMDIA VMNSPNFSNP EERFNFMEVL SEFESTWCSE GRESTQFWFF 660
  661 EMQKYLSNLG FGGDLTKTMN SERKLSQSKK TFLMSHEKFG YDVLSDKQFR LSTRLKNVET 720
  721 DEEMFNCART MRKLSQKHAN YSIITYSPLW NIADEYDIMW PQTMQDIYIS IAVMVPVALL 780
  781 FIPQPLCSVI IGLNIASIAF GVIGTMSFLG VSLDATSMIT VAMSVGFSVD FAAHVSYAYM 840
  841 TESGAQIPGK SAIYSRFCHT LGTIGWPVTQ ASVSVLLGVS SLYLVDSYVV QTCFRTVVLV 900
  901 ILFGTTHALV FLPLLLMNCH RVFDYFKTTS TTSTEP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle