YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21261
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.73
Transmembrane Helix	39	59	0.88
Cytoplasmic	60	68	0.54
Transmembrane Helix	69	90	0.78
Non-Cytoplasmic	91	117	0.75
Transmembrane Helix	118	139	0.83
Cytoplasmic	140	145	0.64
Transmembrane Helix	146	165	0.82
Non-Cytoplasmic	166	175	0.77
Transmembrane Helix	176	198	0.91
Cytoplasmic	199	209	0.84
Transmembrane Helix	210	230	0.94
Non-Cytoplasmic	231	244	0.89
Transmembrane Helix	245	267	0.93
Cytoplasmic	268	352	0.98
Transmembrane Helix	353	374	0.88
Non-Cytoplasmic	375	403	0.95
Transmembrane Helix	404	425	0.93
Cytoplasmic	426	436	0.81
Transmembrane Helix	437	455	0.86
Non-Cytoplasmic	456	464	0.65
Transmembrane Helix	465	484	0.83
Cytoplasmic	485	492	0.79
Transmembrane Helix	493	515	0.93
Non-Cytoplasmic	516	520	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISTHLAPPF QYYAPNPVAP PIPTLDEKYK PFPHYNLEVV QWSLIFGVCL ILGVGMGAND  60
   61 IADSFGTSVG TGILTVTQAF ILATVVEMMG SVASGFSGDG QQLQVVNTES YEDNPDELVI 120
  121 GQIAMLVGCA TWLMVATFYS MPVSAIHSLL GATIGFSLVL RGLDGIVWDR VGMVMAVWIL 180
  181 SPIVSAIFTL ITFFLVDVAI LRAKNPVKRG IFLLPGIYAI VVFSNVFLFL QDGSKVFRID 240
  241 EIPFLYTVAA SLIIAVLAGF LALFVVGPIM QRKLKSKFTD EQKFVTATLH GWLIRKKRTK 300
  301 KISVFILKYS EKTEKLPRIA SSLSYTFPIV PRGWLRRAVY WAFPPMRNDD QKAVRLFSFL 360
  361 QILTACFAGF AHGANDISNC VGPVRDLVHM YNEGYREDNT KLNITVYILL LTTLAVVMGI 420
  421 WTLGVRVIRT VGKFSKMNPA TGFSVQFGAA ITALVNNMYN IPESGTHCLV GSIFGLGLVR 480
  481 SGPILEWHTV KYVFVSWILT IPGSGLISAA VMYLLQAVLG