YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ced-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.69
Transmembrane Helix	90	111	0.52
Non-Cytoplasmic	112	322	0.77
Transmembrane Helix	323	343	0.90
Cytoplasmic	344	352	0.65
Transmembrane Helix	353	373	0.63
Non-Cytoplasmic	374	374	0.42
Transmembrane Helix	375	395	0.78
Cytoplasmic	396	401	0.53
Transmembrane Helix	402	424	0.89
Non-Cytoplasmic	425	429	0.63
Transmembrane Helix	430	449	0.87
Cytoplasmic	450	457	0.63
Transmembrane Helix	458	478	0.82
Non-Cytoplasmic	479	499	0.66
Transmembrane Helix	500	523	0.88
Cytoplasmic	524	1013	0.71
Transmembrane Helix	1014	1036	0.72
Non-Cytoplasmic	1037	1177	0.90
Transmembrane Helix	1178	1200	0.93
Cytoplasmic	1201	1220	0.73
Transmembrane Helix	1221	1249	0.78
Non-Cytoplasmic	1250	1256	0.53
Transmembrane Helix	1257	1279	0.90
Cytoplasmic	1280	1288	0.63
Transmembrane Helix	1289	1311	0.94
Non-Cytoplasmic	1312	1319	0.65
Transmembrane Helix	1320	1346	0.80
Cytoplasmic	1347	1361	0.65
Transmembrane Helix	1362	1382	0.92
Non-Cytoplasmic	1383	1758	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPFPIPMP HSTIVRWLRR YLQNEKAKRK AKESDIECSS SENESNDSTP LRGDGQLAES  60
   61 SRIPKKKMNR LRQFSLLLWK DWVLLRRNKV WTLFELIIPC LLLGPLVYLV VKNADHTSSP 120
  121 ENIYDNFQVK GTVEDVFLES NFIKPIYKRW CLRSDVVVGY TSKDAAAKRT VDDLMKKFAE 180
  181 RFQSAKLKLS VKNESSEEQL LTVLRNDLPM LNETFCAINS YAAGVVFDEV DVTNKKLNYR 240
  241 ILLGKTPEET WHLTETSYNP YGPSSGRYSR IPSSPPYWTS AFLTFQHAIE SSFLSSVQSG 300
  301 APDLPITLRG LPEPRYKTSS VSAFIDFFPF IWAFVTFINV IHITREIAAE NHAVKPYLTA 360
  361 MGLSTFMFYA AHVVMAFLKF FVIFLCSIIP LTFVMEFVSP AALIVTVLMY GLGAVIFGAF 420
  421 VASFFNNTNS AIKAILVAWG AMIGISYKLR PELDQISSCF LYGLNINGAF ALAVEAISDY 480
  481 MRRERELNLT NMFNDSSLHF SLGWALVMMI VDILWMSIGA LVVDHIRTSA DFSLRTLFDF 540
  541 EAPEDDENQT DGVTAQNTRI NEQMNPMAST SLNPPNADSD SLLEGSTEAD GARDTARADI 600
  601 IVRNLVKIWS TTGERAVDGL SLRAVRGQCS ILLGHNGAGK STTFSSIAGI IRPTNGRITI 660
  661 CGYDVGNEPG ETRRHIGMCP QYNPLYDQLT VSEHLKLVYG LKGAREKDFK QDMKRLLSDV 720
  721 KLDFKENEKA VNLSGGMKRK LCVCMALIGD SEVVLLDEPT AGMDPGARQD VQKLVEREKA 780
  781 NRTILLTTHY MDEAERLGDW VFIMSHGKLV ASGTNQYLKQ KFGTGYLLTV VLDHNGDKRK 840
  841 MAVILTDVCT HYVKEAERGE MHGQQIEIIL PEARKKEFVP LFQALEAIQD RNYRSNVFDN 900
  901 MPNTLKSQLA TLEMRSFGLS LNTLEQVFIT IGDKVDKAIA SRQNSRISHN SRNASEPSLK 960
  961 PAGYDTQSST KSADSYQKLM DSQARGPEKS GVAKMVAQFI SIMRKKFLYS RRNWAQLFTQ1020
 1021 VLIPIILLGL VGSLTTLKSN NTDQFSVRSL TPSGIEPSKV VWRFENGTIP EEAANFEKIL1080
 1081 RKSGGFEVLN YNTKNPLPNI TKSLIGEMPP ATIGMTMNSD NLEALFNMRY YHVLPTLISM1140
 1141 INRARLTGTV DAEISSGVFL YSKSTSNSNL LPSQLIDVLL APMLILIFAM VTSTFVMFLI1200
 1201 EERTCQFAHQ QFLTGISPIT FYSASLIYDG ILYSLICLIF LFMFLAFHWM YDHLAIVILF1260
 1261 WFLYFFSSVP FIYAVSFLFQ SPSKANVLLI IWQVVISGAA LLAVFLIFMI FNIDEWLKSI1320
 1321 LVNIFMFLLP SYAFGSAIIT INTYGMILPS EELMNWDHCG KNAWLMGTFG VCSFALFVLL1380
 1381 QFKFVRRFLS QVWTVRRSSH NNVQPMMGDL PVCESVSEER ERVHRVNSQN SALVIKDLTK1440
 1441 TFGRFTAVNE LCLAVDQKEC FGLLGVNGAG KTTTFNILTG QSFASSGEAM IGGRDVTELI1500
 1501 SIGYCPQFDA LMLDLTGRES LEILAQMHGF ENYKAKAELI LECVGMIAHA DKLVRFYSGG1560
 1561 QKRKISVGVA LLAPTQMIIL DEPTAGIDPK ARREVWELLL WCREHSNSAL MLTSHSMDEC1620
 1621 EALCSRIAVL NRGSLIAIGS SQELKSLYGN NYTMTLSLYE PNQRDMVVQL VQTRLPNSVL1680
 1681 KTTSTNKTLN LKWQIPKEKE DCWSAKFEMV QALAKDLGVK DFILAQSSLE ETFLRLAGLD1740
 1741 EDQLDTHSTV EISHSTHV