YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20573
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.50
Transmembrane Helix	7	25	0.96
Non-Cytoplasmic	26	95	0.64
Transmembrane Helix	96	116	0.92
Cytoplasmic	117	124	0.68
Transmembrane Helix	125	147	0.83
Non-Cytoplasmic	148	153	0.83
Transmembrane Helix	154	176	0.91
Cytoplasmic	177	190	0.81
Transmembrane Helix	191	211	0.90
Non-Cytoplasmic	212	226	0.74
Transmembrane Helix	227	247	0.95
Cytoplasmic	248	351	0.91
Transmembrane Helix	352	370	0.63
Non-Cytoplasmic	371	399	0.56
Transmembrane Helix	400	423	0.86
Cytoplasmic	424	431	0.54
Transmembrane Helix	432	452	0.76
Non-Cytoplasmic	453	489	0.42
Transmembrane Helix	490	515	0.85
Cytoplasmic	516	530	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDPTVLLI IGAVIAFILA FAIGANDTAN SFGTSVGSKV LTLHQAYVLA SIFETLGACL  60
   61 LGHQVTDTMR KGVIDFSEFG KHENGTVLMS ENDLGHTIML GQIAILTGCG VWMLLATAFK 120
  121 LPVSTTHSIV GATIGFALVA QGSRVIVWEK IYRIFFSWII SPLLSGIVSV FIYLSLDHLV 180
  181 LRREQPLHSG IRVLPALYFI CFAFNVFAIV YKGPSFLYFD RLSLTQCLII SGVFGLAVAL 240
  241 IFAFFLAPYL KDHILSKELL EITGKQRHSH HGHNEKSSSK RKEFEMEEGN GKYLESDNNG 300
  301 QPLLDQPTIV VSTCPSNGES TSSFAKNTIR PSSSLASFFR SCKPEDPQAS RLFSLLQVMT 360
  361 ACFGGFAHGG NDVSNAIAPL VSLYLIANDG MKSADMETPW YLLLYGSFGM CLGLWVLGHR 420
  421 VIYTVGENLT KITPASGFAV EFGAAVTVLI ASKLGLPISS TQCKVGSVVA VGLVQSRHQV 480
  481 HWGVFRNISL SWIVTLPVAG LLSGGTMMIL HLFSFGTDAT PKDSILQLFF