YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20477
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.96
Transmembrane Helix	32	50	0.92
Non-Cytoplasmic	51	86	0.89
Transmembrane Helix	87	107	0.91
Cytoplasmic	108	114	0.76
Transmembrane Helix	115	135	0.94
Non-Cytoplasmic	136	144	0.79
Transmembrane Helix	145	167	0.87
Cytoplasmic	168	175	0.81
Transmembrane Helix	176	198	0.91
Non-Cytoplasmic	199	206	0.86
Transmembrane Helix	207	227	0.95
Cytoplasmic	228	267	0.95
Transmembrane Helix	268	289	0.83
Non-Cytoplasmic	290	302	0.73
Transmembrane Helix	303	323	0.83
Cytoplasmic	324	335	0.92
Transmembrane Helix	336	357	0.91
Non-Cytoplasmic	358	363	0.82
Transmembrane Helix	364	384	0.92
Cytoplasmic	385	394	0.79
Transmembrane Helix	395	420	0.85
Non-Cytoplasmic	421	428	0.90
Transmembrane Helix	429	452	0.90
Cytoplasmic	453	478	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVGDAEEK IEKSDEMSEN SRKTSKILCC NLTRYLILIL TLTCLTLLQM NSLAFNFTVI  60
   61 CMSDVSDDYH ITHPNETHWF EDSNMKSLVF SSMAVGGLLG LLIAMPLMHR VGVRLVLSIC 120
  121 GVFSILGTIL FPLAVEWNFF SVLVVRFLQG LGISMVFTVL GSVPTAWAPN NESGTFLAVL 180
  181 SCAFQWSNVI CMPISGFLCE SSWGWRSIYY LFGIVTIVFF LAFYFFYTDS PTDHRNVSNK 240
  241 ELSLILQDKT VTHKEPVPYL AICKDPCVLV TWMSNIGGNL GFLTLVLYGP TYLREVLNFE 300
  301 VRGTGFASAL PFLLSAAVKS IAGQLSDRCD FVSERVRFTI CGIVARLGLA IGYIGMATTS 360
  361 SRLVAQIAFT FSIAVSGLNI MGTVKCLQLR CKQHVHFAVS VIALMAYVIQ FGAPILVGII 420
  421 CPDNTAEQWG WFFLIVGIIV FVTSAPFPWF TTAEPADYTL SREKQLEIAK HKELQECC