YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20476
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	54	0.84
Non-Cytoplasmic	55	91	0.88
Transmembrane Helix	92	112	0.93
Cytoplasmic	113	118	0.77
Transmembrane Helix	119	141	0.87
Non-Cytoplasmic	142	150	0.62
Transmembrane Helix	151	171	0.92
Cytoplasmic	172	179	0.81
Transmembrane Helix	180	202	0.90
Non-Cytoplasmic	203	211	0.80
Transmembrane Helix	212	232	0.93
Cytoplasmic	233	272	0.94
Transmembrane Helix	273	294	0.90
Non-Cytoplasmic	295	308	0.80
Transmembrane Helix	309	327	0.88
Cytoplasmic	328	341	0.91
Transmembrane Helix	342	362	0.96
Non-Cytoplasmic	363	369	0.82
Transmembrane Helix	370	392	0.92
Cytoplasmic	393	401	0.80
Transmembrane Helix	402	425	0.86
Non-Cytoplasmic	426	436	0.83
Transmembrane Helix	437	457	0.94
Cytoplasmic	458	475	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVTGDYEMV KVVGGGDSDI FETPQRKISN FVFWNQTRVF ILILSLTCMT LTQINSQIFT  60
   61 FTVICMDDLI VEQQTSNLTE PHWIEGTTEK SILFSATAIG ALVALIPSVP ILNSLGVRLT 120
  121 LSFCGLCSTL GTFFTPLAVT YSFYLVVFCR VLQGIGISVI LTVLGVIPSY WSPKTEYSTY 180
  181 LAILSCAWQF SNVIFMPISG ILCDSSFGWR SIYYVFGVAT GFFYFVFFMF YTDIPGIHKN 240
  241 VSEKELGQIV EGKPEHTVRE AVPYWKICTD RCVLSAWVSF LGGNLGFITL LLYGPTYLRE 300
  301 VLQFDVRSTG YINALPYALC AIYKFGAGKI SDRVTFASDK AIYTFWLFSS IIGLGIGYII 360
  361 MAWTSDRNVA FVAFAFAVVT SGLIIMACVK CLAMRCQQHC HFAVSAISFL SYCVQFISPL 420
  421 GVGILCPDNT PDQWSRLFII ITLIMIITNA PFPWLTTQQA ANYTKRKDPK AFEKC