YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abt-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	44	0.91
Non-Cytoplasmic	45	316	0.96
Transmembrane Helix	317	343	0.85
Cytoplasmic	344	363	0.88
Transmembrane Helix	364	388	0.85
Non-Cytoplasmic	389	394	0.76
Transmembrane Helix	395	415	0.91
Cytoplasmic	416	423	0.71
Transmembrane Helix	424	444	0.91
Non-Cytoplasmic	445	501	0.94
Transmembrane Helix	502	524	0.86
Cytoplasmic	525	970	0.77
Transmembrane Helix	971	988	0.65
Non-Cytoplasmic	989	1156	0.63
Transmembrane Helix	1157	1178	0.95
Cytoplasmic	1179	1197	0.93
Transmembrane Helix	1198	1219	0.91
Non-Cytoplasmic	1220	1236	0.76
Transmembrane Helix	1237	1259	0.88
Cytoplasmic	1260	1272	0.79
Transmembrane Helix	1273	1292	0.94
Non-Cytoplasmic	1293	1298	0.83
Transmembrane Helix	1299	1322	0.81
Cytoplasmic	1323	1369	0.93
Transmembrane Helix	1370	1390	0.93
Non-Cytoplasmic	1391	1802	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALGQLRLL LWKNWLQQLR SPWFALFELV VPLILIGASF GLLIGFSGQF ETTYTERKYA  60
   61 AWPVSGSAYD LIMPTDPDDP IKSAIVEPYF LFNSQLTCQF LNTYTIGVNK YRMDIIFAYA 120
  121 PMTDATKQIM DKIQNRYTAN DLLNPVAAYI KGLYNITAVP VLNTNMTYKG FTTEGEMVSW 180
  181 MQGQFQSECD NPLLAGIVFD DSIAKDLKNP DKRDFTYTIR LSNTHRRSRN AFGDNSYPWD 240
  241 TSVSFAVQYV SGPINPDDND GGSPGYWQEG FMTVQRAVDV AITEIITGED AQLTPLLDSY 300
  301 QVSRFPFPGY STKIIEIGAF FMPVIVIFSF MTSVIYIVRA VVVEKEDRLK EYMRVMGLSQ 360
  361 FINWVAHFII NYAKLTFAVI VLTILMHFVA LKSDMTLMFV FLMIYAFDVV YFAFMISSFM 420
  421 NSATSATLIS VVFWMLLYFW YAFFSSIDQT NPYPLGYRLI NCINPDIALN YGLQLLAAYE 480
  481 TQADGLKWGE LFTPPSPDNN LTFGHALIAL IVDGIIMIIL TWYIEAVIPG GEGVPQKPWF 540
  541 FVLPSYWFPN SGSKTVDSSD QFQQIQYADH VKLEKEPTDL IPTINVVNLT KTYGTSFFKK 600
  601 LFDCKFGKSG EKRAVSNLNL KMYPGQCTVL LGHNGAGKST TFSMLTGVAS PSSGSAYVND 660
  661 FDIRTSLPKI RREMGLCPQY NTLFGFMTVM EHLEFFAKLK ERTWDPEEAR EILARLRIDF 720
  721 KADFMAGALS GGQKRKLSLA IALIGGSEVV MLDEPTSGMD PGARHETWTL IQREKERRTI 780
  781 LLTTHFMEEA DLLGDRIAIM AHGQLECCGS PMFLKQQYGD GYHLTIVYDT TSTPDVSKTT 840
  841 DIIREYIPEA HVFSYIGQEA TYLLSATHRP IFPKLFKELE DHQTQCGITS FGVSITTMEE 900
  901 VFLKVGHTAD ERYNYEHGIE NDISEMIEKD DPILQDLRAQ VRVTGFTLQM QHAKAMFYKR 960
  961 AIFFFRKWTQ FLPQLVFPVA YLVLMVFTSQ VLPSVKEQDP QTISLAPFSD TKKAGHLVSD1020
 1021 SGNYVTLLGG SQNLSSMVQG TVTQLGVTQT VVDITSNVEK FIMDQTNAMG SRTFGLHYAL1080
 1081 GFVPSMFNFS TVSVPSLKTF FNNFGLYTPA LAITFTDSMI LSQKQKKQYS FTAVNHPLPP1140
 1141 STQDTLKNTN RSDGAAFLIA YGLIVSFAVC VAGYSQFLIT ERKKKSKHMQ LLSGIRPWMF1200
 1201 WLTAFIWDAA WFVIRILCFD AIFYIFNITA YTHDFGVMLI LTLSFLLYGW TALPFTYWFQ1260
 1261 FFFESAPKGF MMVTMYHILT GMIGSIAVPI ISQTSSLDAG YLWSIIFAWL FPTYNISQIA1320
 1321 TVTFQNENVR IACKKLDCTI PMFKAVTACC GTASERLYVD NVLFVGNRKG ILVYVIFLAV1380
 1381 QGFIYWIWVF MRENDQFTKL FALIRCRKAD NPIWDITDTD KVDERDVEDS DVIAEKSVVQ1440
 1441 RLANNNKTAL VSNNLVKWYG NFNAVKGVNF HVNSKDCFGL LGVNGAGKTS TFQMLTGENS1500
 1501 ISSGDAYVNG WSVKNNWREA GANTGYCPQY DAIIKEMSGE ETLYMFARIR GIPEKDIPKK1560
 1561 VNAVIHAIGI GMYASRQIKT YSGGNKRRLS LGIAIVGLPD VLLLDEPTSG VDPKARRIIW1620
 1621 NILNRLRDLG TALVLTSHSM DECEALCTEL AIMVYGKFRC YGSCQHIKSR YGSGYTLLIR1680
 1681 LKNRNDAEKT KSTIKQTFRG SVIKEEHVLQ LNFDIPRDGD SWSRLFEKLE TVSTSLNWDD1740
 1741 YSLSQTTLEQ VFIEFSRDAG VSSDSEFDGA SSTGSANSRG KQNGYTNRAL TIESDAESAM1800
 1801 YF