YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|141795800, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	76	0.93
Transmembrane Helix	77	95	0.89
Cytoplasmic	96	101	0.77
Transmembrane Helix	102	124	0.85
Non-Cytoplasmic	125	140	0.82
Transmembrane Helix	141	159	0.93
Cytoplasmic	160	166	0.78
Transmembrane Helix	167	186	0.90
Non-Cytoplasmic	187	196	0.73
Transmembrane Helix	197	216	0.94
Cytoplasmic	217	229	0.85
Transmembrane Helix	230	248	0.94
Non-Cytoplasmic	249	265	0.86
Transmembrane Helix	266	286	0.91
Cytoplasmic	287	295	0.84
Transmembrane Helix	296	315	0.92
Non-Cytoplasmic	316	322	0.68
Transmembrane Helix	323	343	0.94
Cytoplasmic	344	358	0.89
Transmembrane Helix	359	382	0.85
Non-Cytoplasmic	383	410	0.92
Transmembrane Helix	411	432	0.92
Cytoplasmic	433	489	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNFIECCRG FWCGPKNPNV RVSLPIVCFI WQIAMIILFG LFVRYDIESD AHWAEHKKHE  60
   61 NITSDIENDF YFRYPSFQDV HVMIFVGFGF LMTFLKRYSF GAVGFNFLVA AFGLQWALLM 120
  121 QGWFHSLDPV DGTIKIGVES LINADFCVAG CLIAYGALLG KVSPVQLMVM TLFGITLYAV 180
  181 EEYIILNLLH VRDAGGSMVI HTFGAYYGLT ISWILYRPKL DQAKHLNGSV YHSDVFAMIG 240
  241 TLFLWMFWPS FNSAISNHGD GQHRAAINTY LSLAASVLTT FAISSMSAKK GKVDMVHIQN 300
  301 ATLAGGVAMG TAAEFMISPY GSLIVGFCCG IISTFGYVVI TPFMEKYLKI QDTCGVHNLH 360
  361 AMPGLIGGIV GAITAAAASP TVYGQEGLVN LFGFTGDYAN RSSATQGGYQ AAGIAVALAF 420
  421 GIVGGIIVGC ILRLPIWGDP SDENCFDDEV YWEVPEDEES IPPVLEYSSH MVGKNPDMMS 480
  481 ESNFTVEHR