YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fce-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASCLFKAL LATNWALFLW DQYITFRQYK AHKNAVKRPN EVKELIGEED YKKARDYKID  60
   61 NHLFGFFHSW FNQLLLTAQL IGGYYPFLWY ATASYPLHVA VFLSINSIIE TIIDLPWDLY 120
  121 STFIIEDAHG FNKQTIGFYF VDKIKKMLVG FALTMPIVYG IEWIIVNGGP YFFVYIWLFV 180
  181 SVVVLLLMTI YPTFIAPLFD KYFPLPDGDL KTKIEQLAAS LSYPLTELYV VNGSKRSAHS 240
  241 NAYMYGFWKN KRIVLYDTLL SGAEKEKVHE LYVAAGEKIE ETENDKKRGM NNDEVVAVLG 300
  301 HELGHWALWH TLINLVITEV NLFFSFAVFG YFYKWEALYQ GFGYHDTPPV IGMMLIFQFV 360
  361 LALYNQLASI GMVIHSRSAE FGADEFAANL GHGENLIGAL TKLGVDNLSM PINDSLYSWC 420
  421 THTHPPVVER VAAVRAFQAK NK

Type	Start	End	Confidence
Cytoplasmic	1	62	0.87
Transmembrane Helix	63	83	0.73
Non-Cytoplasmic	84	93	0.47
Transmembrane Helix	94	113	0.68
Cytoplasmic	114	146	0.88
Transmembrane Helix	147	166	0.92
Non-Cytoplasmic	167	172	0.87
Transmembrane Helix	173	195	0.92
Cytoplasmic	196	310	0.97
Transmembrane Helix	311	333	0.88
Non-Cytoplasmic	334	349	0.87
Transmembrane Helix	350	368	0.92
Cytoplasmic	369	442	0.96