YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vha-19
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLFAVFSL IMACQAYDAV LFSNSREIGG TPAAKLVESA TAEEPVVFIV NPDFTLGQFS  60
   61 VKANAYTSEP SADYLAKSVK NSNFHESQYF SHQIEATQAQ WLSSADQYSA GSPIYIIYGE 120
  121 EWTSMEQLAE QLISKIDNSV GIITSTDAVA HEKSSRVKRV ATDEFNSDSE NSAAAEANGG 180
  181 FPFPLVIPPY NQTFYSVKPT NGHSCLFYLE GLTVVVEQKK EKVLYYANAY IPGSNFTWAY 240
  241 SETDVTCPNG TIGDFIFKIH LTLENDITGM QGTSKKAFTM KKGDKIDFDL TFTGDLFGYW 300
  301 ALNKASASNL AISGYDPYKS ASVDGSKVVN GSATQYTKLN SVAGWSLACG QSQAVFFPTN 360
  361 EQSVRIGVAL MNTQIQLFNY QNPEKWVESA HFTLQTEDCT GTFSSGSWMG IVSALVLIAG 420
  421 LMFGYVMLQS VQTMDRFDDP KQRQIVINVR E

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	405	0.99
Transmembrane Helix	406	427	0.90
Cytoplasmic	428	451	0.93