YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: smp-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRILTLLLL FNVVRSSEAI TGGVVNLRPK QIINSVGIGD RFGGIGTSSD ESDHFKLLAA  60
   61 DGDSLLVGAR NAVYNLSLST LSVNHKIDWK PPAEHIEECI MKGKSKTDCQ NYIRVLARKS 120
  121 AGVSLVCGTH AFSPKCREYT VTEFGIRNTR QFDGQGISPY DPKHNSSALY VPGTNQLFVA 180
  181 TVTDFVGNDA LIYRKTIDET PSSKSAANIR TQSYDARVLN APNFVATFAY KEHVYFWFRE 240
  241 IASEAIDNNE EPQIYARVAR VCKNDKGGAR PANERWTSYL KARLNCSLPS GSSPFYFNEL 300
  301 KAVSDPIDAG NNNHVVYTVF STPDSDVRMS AVCKFSMKKI REEFDNGTFK HQNNAQSMWM 360
  361 AFNRNEVPKP RPGSCSPDST KLPENTVSFI LHHPLLHRPI PSVAAPLLVE GADRADLTQI 420
  421 TVLPRVRAVG GHNYDILFIG TSDGKVLKVV EVDGNATVIQ SATVFQRGVP IVNLLTTKES 480
  481 VVIVSADEIA SLPVHNCAQQ TSCSKCVQLQ DPHCAWDSSI ARCVHGGSWT GDQFIQNMVF 540
  541 GQSEQCPEGI IVREVFDDNE SEAQPEAVSR SGYPKEHSTI TVVLVAAVAS LISLIIGAFI 600
  601 GIRVNRWAAT SEPHRSASST SGSDYDSFGR ARLTRHDSLT TATKVDHGFV PQSKQSVDAT 660
  661 SLVMSINATH HPMSMSQHGS GINTPSRDKN AIVTSINQNT LPRDYKVKKV YL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle