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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lst-3
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGGKPP GQWHRPAAPG GAPQLSGFSA VNFGGVPMVG MGVPMGMVNQ AAFSSQGVLG  60
   61 MQGIMGAVPQ QSLPQQQPNF QQQNSLQQGT NMQQNSGAKN QRTFVGVVTK MLDTYGFVDD 120
  121 DVFFQHSVIR GSHPRVGDKV MVEANYNPSM PFKWNAYRIQ LLNAATQQEP ARQAPQQQQM 180
  181 HQPQRGGQES QRWGAAPASG TSDRADRNGG ARGNDSPLHR SSAARRHSPP PRRASPPRRT 240
  241 SSPKRDARPA REIRDSREPR EVRRSPPPRR AASPRKASSP SAPAKNDRKR ERSPSGSVAP 300
  301 SVRRESASPP RRRARIIPRY ECRAQKPALL SPIVSGSVLR HRYSKLYLPS DYVDLSFDWV 360
  361 RSFQLDLSLD LSNPIQFHVF NKDVDFIGEE EIQDLDPEDA DHRHQVKVLL LSHAGKSEVV 420
  421 KKAFCLMADG TTDDHQEPQS LLKNLHFLVG ARGKETMGIG GSWSPSQDGA DPNSATTMIR 480
  481 TAVRTTKSLT GIDLSSVSQW FSMVQIRYYR ADKQRIDHVN YLLPDTQSLA LDDAQWMLAE 540
  541 TKIAEQLKAK LANVDALKIE EDEPPVVMMV EESESVVAAA AAAADVVPEQ SIPDVKKEEE 600
  601 LQAEEPKVLD NVKESIVLLW AEESDVVADV SMNSTTDADN SEAPAAENGQ GPTNWSNLDP 660
  661 KSMKVAELRV ELELRGLETK GIKTLLVQRL QTALDTEKAA EASVAARDVE MRDAAENAVK 720
  721 QEGGEENPAA FIAPSIEETK AKTEAEAKKE AEEAEKRKKK EEQLEKEKKE KREALEKHYQ 780
  781 LPKDKKILVF PSKSFKSGKF DCKVLSLSSL LDYRHDDNKE NQFEVSLFAE AFKEMIERNA 840
  841 AFTIYETLAN CGDRDAEKKR RDEAREKPVE PKEPKEPAET TEKAAEGEEK KDEKEEKRDE 900
  901 KKDEKREEKR EKVERIDLKS VVANRTVYEA FSLFDSNLCG YLTEKDIEEI LYNGEFGISR 960
  961 GQIQKLAKKL SVRDKINYRH LTDVLTDMDG NVRHTPGGAD DVVETDDLIR GFGYNLAKSM1020
 1021 EPADSGAAVK SSEVSASSDG VVIINGSAVN VVQKMKLLKQ VEKERDEAKS TVSEQLSLIE1080
 1081 QLREAKAEID KKKKDIDSHY HKSNKKLNET SAQLKSTQDE NSALKQALQD CKRHADRIFS1140
 1141 VVEKVMPPPP KKEEKSKKDE KEKTDKKDDK VSEKSAEKST EEPSQEVPAS AEQAAEPSTE1200
 1201 AEPIVIDESE DKDAEVVEES KE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle