YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19029
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.96
Transmembrane Helix	31	50	0.92
Non-Cytoplasmic	51	72	0.87
Transmembrane Helix	73	93	0.90
Cytoplasmic	94	103	0.69
Transmembrane Helix	104	121	0.94
Non-Cytoplasmic	122	127	0.75
Transmembrane Helix	128	146	0.75
Cytoplasmic	147	166	0.75
Transmembrane Helix	167	190	0.89
Non-Cytoplasmic	191	204	0.75
Transmembrane Helix	205	225	0.95
Cytoplasmic	226	257	0.80
Transmembrane Helix	258	280	0.87
Non-Cytoplasmic	281	293	0.77
Transmembrane Helix	294	315	0.92
Cytoplasmic	316	325	0.72
Transmembrane Helix	326	349	0.89
Non-Cytoplasmic	350	369	0.76
Transmembrane Helix	370	393	0.84
Cytoplasmic	394	405	0.75
Transmembrane Helix	406	424	0.75
Non-Cytoplasmic	425	428	0.62
Transmembrane Helix	429	451	0.90
Cytoplasmic	452	475	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSNIPYVL EESSAKPKRF WMELTPRRHE LLSTYLLGIG TLFLYTGYSL QQFIGESVIH  60
   61 SIHEKSPDTI SAYAGYYGAA FHLSAFAVFS LITPSLQHFV PSKWFLTLAS ALFAVYYLGF 120
  121 FQLNKYYFYL TQALMGVGYS FYNNGEGQYL SEHSSRRTIE SNTGIETAVG HASMFFGGIA 180
  181 LIVLCFLLHT DGGTGIEYSD LQIRFIYGTM FILNIFSVIV FAFLPTKQYD SIASKSSTVV 240
  241 PSFANQIKQL LKAFQSTNLL ILMPFFFFQG FAVSFLMTVY PTTLSFTHAF KTDIYIIGIY 300
  301 SVSMGLAEAI GGIFLRPLLK RAGDYGLYVT AGFNFLSYSV VIILAFLSIP NLSTFGPTSS 360
  361 PPIFLTPSRL LVFIIGFLIG FSDFCVTMAR AVICQVAVPD CRMQVFSLSK LYQSGSSVVV 420
  421 LLLTPYMTIY IWLCVLTIFL LIGTTCFVIV ARRTAADRQK HSIAHPSQAQ LADKI