YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vha-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	413	0.95
Transmembrane Helix	414	437	0.91
Cytoplasmic	438	453	0.89
Transmembrane Helix	454	474	0.88
Non-Cytoplasmic	475	526	0.88
Transmembrane Helix	527	547	0.57
Cytoplasmic	548	554	0.67
Transmembrane Helix	555	577	0.87
Non-Cytoplasmic	578	583	0.67
Transmembrane Helix	584	608	0.84
Cytoplasmic	609	620	0.63
Transmembrane Helix	621	643	0.79
Non-Cytoplasmic	644	692	0.78
Transmembrane Helix	693	714	0.92
Cytoplasmic	715	762	0.75
Transmembrane Helix	763	785	0.52
Non-Cytoplasmic	786	796	0.49
Transmembrane Helix	797	826	0.78
Cytoplasmic	827	865	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIYRSEHM KLCQIFFQSE SAYQCVAELG ELGMAQFIDL NEEQNAYTRK FVNEVRRCDE  60
   61 MERKINFVED EITKDLVPIP DYDEHIPAPQ PKHMGEMEAN LEKLEEELVQ INKNCKVLKN 120
  121 NHVQLLEMKA VLEHVTSLLD PHSKREAAMS ISEAARGEAG PISFGMKDEF DKPVKDEKEL 180
  181 KFVTGVVKRS KAIAFERFLW RLSRAKVFAK FIQIQEQTEL FSNEFEDKCV FILFFSGEQL 240
  241 RAKVKKICDG FQAKCYTVPE NPAERTKLLL NIKVQTTDMK AVIEKTLDYR SKCIHAAATN 300
  301 LRKWGIMLLK LKSIFHTLNM FSVDVTQKCL IAECWVPEAD IGQVKNSLHM GTIHSGSTVP 360
  361 AILNEMETDK YPPTYFKLNK FTQGFQNIVD AYGIANYREV NPAPWTIISF PFLFAVMFGD 420
  421 AGHGIIMLIA ASAFVIFEKK LISMKIKDEI FNTFFGGRYV VLLMGMFAIY TGFIYNDFYS 480
  481 KSVNIFGSSW VNPYNQTLLA NMDAQGADSN TDLSLTFPPE IAFNHDYGPY PFGVDPVWNL 540
  541 AINRLNFLNP MKMKTSILLG ISQMAFGIML SLMNHIGNRS VVDIVFVFIP QCLFLGCIFV 600
  601 YLCLQVLMKW IFFYVKPAYI FGRLYPGSNC APSLLIGLIN MFMVKSRDAS FAHDVGTAAG 660
  661 KEWVIVNGQN VTYTINDQCY LQQWYPNQSL VELILLLIAV VSVPVMLLVK PFYIRWRHSR 720
  721 GLHIDLGHGP DEHGEFNFGD IMVHQAIHTI EFVLGCVSHT ASYLRLWALS LAHAQLSDVL 780
  781 WTMVLRMSLT MGGWGGSAAI TILFYFIFSI LSVCILILME GLSAFLHAIR LHWVEFQSKF 840
  841 YGGTGIQFEP FCFTKIIRVY EGLDQ