YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-40
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWKTYARI ILAHVSLIVL SVVYVGFGAF LFYQLEQPNE VEVRARNIER FNIHKRQMIE  60
   61 HLWEMRESGI GQHVVEDLAV KYVDNVTRIL FEAFDTHCIG AKHLRPGGED EDYNWTYMTA 120
  121 LFFTTTLLTT IGYGNLTPVT GRGKLLCILY ALFGVPLILI TVADIGKFLS ENIVQLYTWY 180
  181 RKLREKCSKQ KYSVISSKDD KNKEGDLNLD HLENYISIPI FLIVAILLSY ITFGAVVLSM 240
  241 WEGWDFFSGF YFSFITMTTV GFGDIVPLKR EYYILDLCYI IIGLSITTMC IDLVGIQYIR 300
  301 KMHYFGRAIK DARFALVNVG GKMVHVPDLM RYASVLQQKY GQKKTHDTII VKGAYAPKDL 360
  361 SKIRFIDFGA LASIESWQSL WSILTGRTQE VHV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	32	0.92
Non-Cytoplasmic	33	115	0.98
Transmembrane Helix	116	137	0.91
Cytoplasmic	138	145	0.86
Transmembrane Helix	146	166	0.93
Non-Cytoplasmic	167	215	0.96
Transmembrane Helix	216	238	0.91
Cytoplasmic	239	246	0.77
Transmembrane Helix	247	266	0.94
Non-Cytoplasmic	267	276	0.72
Transmembrane Helix	277	296	0.95
Cytoplasmic	297	393	0.93