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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-6
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYTFGEVSQ VLVTITNAIN NKTIDPADLE KAYEEYERGM NQVVFHFFLC GCAYFIFASL  60
   61 QHAIMKYVGD NTTYRVRKQY ISRLLKKDAQ YFDSVSTGHL STVLNDNLER FREVFNEKIA 120
  121 LIIAFVTDFT LGTALAFYTD WRLASYGIFF SLGIAFSGFI NSAGVMKTTG KQNTHYANAG 180
  181 SIAFQTLGAY KTVCSLNGQK TEIERYTEEL KAGEKYGIRR ALMYSISRGV TYFFCNSLNT 240
  241 VVLYVGATMI YSGTLETAVV VRLFHYMLFG AFCLSEALPH ISRLAGAISS TAPIAEMLIK 300
  301 DDNVIEKDET DYDVEVEVNG NISFKNVKFS YPTRPDAQVL KGISFDVQNG ECIALVGASG 360
  361 SGKSTVVQLL LHYYNIDSGN IFIDGMDLND MNIKRLRRVI GVVSQEPVLF NTTIEENIRF 420
  421 GNPNVSLPEI YGALRKANAY DFVCSFPKGI KTIVGERGTQ LSGGQKQRIA IARTLVRNPK 480
  481 ILLLDEATSA LDNESEQVVQ KALENASQGR TTIVVAHRLS TIRNASKIIV MQKGEIVEVG 540
  541 NHDELIAKRG VYNDLVQAQL LESHDDHEEL PPLAARQLSQ ELSPLHSYAI QRSTSNDAGV 600
  601 HDDDMERILD ELSKEGAKKS NLREIVKQCR PDYCFLFIAV FGSAIQGVSY PILAQLIVRT 660
  661 YEGFAMIGED MLYYSHLWAL SFMFLAVFRP LTLYCQYYYF GKVSEQLSTR LRIKSFSHML 720
  721 SLPCAFYDDP NHSATRLSNR LNTDSSNVKA AVDDRLGCVI MTVVAISIAI TTASLYCWKM 780
  781 TLEVLMFFPL LYLAEYCYEA ATETAIQEDT IAFENSNRTA IEALENVRTV RALNLEDKIM 840
  841 SLISEHLQKI HKSYFKRAII QGAANGLSLS CFLFVYSVSF KFGTYLALRK EVAPMDTYLV 900
  901 LMTLSMTANM AGSAAAYLPD YKKAVHAAGL IFHLFTYPAT MPFSSSDGKK NIEKGEIIGE 960
  961 NVQFHYDQRP DRMILNGVNL KVDPGKTLAL VGPSGCGKST IISLLERFYH AVDGEVKIDS1020
 1021 ENVEDINLNH LRSNLALVSQ EPTLFNCSIR ENLLYGLTRS VPQLELEKAL QTANAFNFVF1080
 1081 QFPQGLDTLV GERGAQLSGG QKQRIAIARA ILRNPKVLLL DEATSALDSD SEKVVQNALD1140
 1141 TASERLSTVV VAHRLSTVVN ADSIAVLKNG KVAEQGTHEE LLRKRSIYWR LVQKQGIQVE1200
 1201 TPSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle