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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sca-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDAHAKDAN EVCKFFGTGP EGLTPQQVET LRNKYGENEM PAEEGKSLWE LILEQFDDLL  60
   61 VKILLLAAII SFVLALFEEH EDQTEAVTAF VEPFVILLIL IANATVGVWQ ERNAESAIEA 120
  121 LKEYEPEMAK VIRSGHHGIQ MVRAKELVPG DLVEVSVGDK IPADLRLVKI YSTTIRIDQS 180
  181 ILTGESVSVI KHTDSVPDPR AVNQDKKNCL FSGTNVASGK ARGIVFGTGL TTEIGKIRTE 240
  241 MAETENEKTP LQQKLDEFGE QLSKVISVIC VAVWAINIGH FNDPAHGGSW VKGAIYYFKI 300
  301 AVALAVAAIP EGLPAVITTC LALGTRRMAK KNAIVRSLPS VETLGCTSVI CSDKTGTLTT 360
  361 NQMSVSKMFI AGQASGDNIN FTEFAISGST YEPVGKVSTN GREINPAAGE FESLTELAMI 420
  421 CAMCNDSSVD YNETKKIYEK VGEATETALI VLAEKMNVFG TSKAGLSPKE LGGVCNRVIQ 480
  481 QKWKKEFTLE FSRDRKSMSA YCFPASGGSG AKMFVKGAPE GVLGRCTHVR VNGQKVPLTS 540
  541 AMTQKIVDQC VQYGTGRDTL RCLALGTIDT PVSVSNMNLE DSTQFVKYEQ DITFVGVVGM 600
  601 LDPPRTEVSD SIKACNHAGI RVIMITGDNK NTAEAIGRRI GLFGENEDTT GKAYTGREFD 660
  661 DLPPEQQSEA CRRAKLFARV EPSHKSKIVD ILQSQGEITA MTGDGVNDAP ALKKAEIGIS 720
  721 MGSGTAVAKS ASEMVLADDN FASIVSAVEE GRAIYNNMKQ FIRYLISSNV GEVVSIFMVA 780
  781 ALGIPEALIP VQLLWVNLVT DGLPATALGF NPPDLDIMDR HPRSANDGLI SGWLFFRYLA 840
  841 VGTYVGVATV GASMWWFLLY EEGPQITYYQ LTHWMRCEIE PDNFADLDCA VFEDNHPNAM 900
  901 ALSVLVTIEM LNAINSLSEN QSLLVMPPWK NIWLMAAISL SMSLHFVILY VDIMATIFQI 960
  961 TPLNWVEWIA VLKISLPVLL LDEILKFIAR NYIDVEAPIK DKRD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle