YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.90
Transmembrane Helix	16	38	0.86
Cytoplasmic	39	56	0.87
Transmembrane Helix	57	78	0.89
Non-Cytoplasmic	79	87	0.84
Transmembrane Helix	88	109	0.89
Cytoplasmic	110	119	0.73
Transmembrane Helix	120	139	0.89
Non-Cytoplasmic	140	158	0.86
Transmembrane Helix	159	178	0.91
Cytoplasmic	179	316	0.92
Transmembrane Helix	317	338	0.62
Non-Cytoplasmic	339	346	0.63
Transmembrane Helix	347	367	0.83
Cytoplasmic	368	429	0.84
Transmembrane Helix	430	449	0.83
Non-Cytoplasmic	450	453	0.60
Transmembrane Helix	454	474	0.91
Cytoplasmic	475	533	0.96
Transmembrane Helix	534	557	0.83
Non-Cytoplasmic	558	562	0.81
Transmembrane Helix	563	583	0.70
Cytoplasmic	584	938	0.97
Transmembrane Helix	939	960	0.84
Non-Cytoplasmic	961	990	0.89
Transmembrane Helix	991	1014	0.87
Cytoplasmic	1015	1058	0.92
Transmembrane Helix	1059	1077	0.88
Non-Cytoplasmic	1078	1082	0.66
Transmembrane Helix	1083	1103	0.89
Cytoplasmic	1104	1169	0.92
Transmembrane Helix	1170	1189	0.90
Non-Cytoplasmic	1190	1194	0.71
Transmembrane Helix	1195	1217	0.76
Cytoplasmic	1218	1503	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDQLLNST GPPISIILPS NYVIVPSIFF WILTPVIIHD CKTSRQTPLP WSTLMSLKWF  60
   61 VASLLIIDRL FVFLLAVWES LFEHKNVTAD LFIIPFFHSF TLLALLIATN EVRRAGIHSS 120
  121 GPLFCIWMLF AVAAVPEFYQ WMTTGSQPEL VARIDFFRYV AYLTYFPLVV AEFVLHFVSD 180
  181 PFPMPRGYQN LKCPEENANF ISRQLLLWFT QIISLGYERT LVADDVFEMD SQMDQEYLKA 240
  241 RWKTEWLKQT EKAREKQVKL DDKRERARTG SEKAPLLGTF NNYGAVNLDD KDRVIVQPSV 300
  301 IVTLWQIMKW EILGGSFIKF LSDLLQFANP TFLNYLILFI ETPNAPLING IGLAVGLFLA 360
  361 GQIKSLFMNT YFIAMTRVGA KIQTMLSCAV YEKSLLLSNT ARRERTVGEM VNILSIDVDR 420
  421 FRMITPQIQQ YWSSPFQIII CMVLLSQTIG VAVWAGIVVM ISIVPINICV SMITKRWQLR 480
  481 LMKYKDERIR LINEVLNGIK VVKLSAWETA MEETIERVRD KELKMIKQSA LLKTFADCLN 540
  541 VGAPVFVALS SFTVFVLIDP KNVLTPNIAF VSLSLFNLLR GPLMMAAELV AQTVQLVVSN 600
  601 KRVRTFLCEK EVDTAAIDKE IRGELYTNTV EIHSGSFAWD SAEARILSDI EFLAGSKELV 660
  661 TVVGSVGSGK SSLLLAALGE MEKVCGYVGV RGSVAYLSQQ PWILNQSLKK NVLMQADLND 720
  721 VLYKKVIESC ALKEDLKQLP DGDDTEIGEK GINLSGGQKA RIALARAVYQ SKDVYFLDDP 780
  781 LSAVDAHVGK HIFDNVIGPN GMLSHTTRIL VTNCTSFLQE SGKIIVMKDG RIKHCGTYNE 840
  841 LLTDVEAREY LQEVDNEYAQ AQESSGEESG GEENSDILPG SIASGSRMSR LSRLSKISRK 900
  901 KSKSSIVEKK KPDALITKEE AAIGRVNPGV YLLYFKAMGI VTYVLPYAIA VVLNVSFALG 960
  961 RSLWLTAWSD ANIDINHPDT MSVGARLGVY AGFGITEVIF LFFSLVLLLI GGVAASKNLH1020
 1021 KPLLHNVLRN PLSYFDITPI GRIINRLAKD MEVVDLRLSS SFRFLVMALI NMTVLIVSYT1080
 1081 TPLFIAIIIP VFIIYFFVLK YSIKSTRQLQ RIASLTRSPI FSNFSETLQG ISTVRAFQWS1140
 1141 DEFVRRNDEH LNTHVKCSYY SQMANRWLSI RLELLGNIVI FSAAILAIIG KESGITAGML1200
 1201 GLSVSYSLNI TFMLNMFVRQ INEVETNVVS VERIDEYSKT KSEAEWRLDN NNLPSNWPTG1260
 1261 GAVNIEDYSC RYRDELDLVL KQISLNILPG QKVGVCGRTG AGKSSLALAL FRIVEAADGN1320
 1321 ISIDQTITSH IGLHDLREKL TIIPQENVLF ANTLRFNIDP KGQFTDQQLW LALENSNLKA1380
 1381 HVELLPHKLE SPVAEGGENF SVGQRQLLCL TRALLRKSKV LVLDEATAGI DNRTDTMVQA1440
 1441 TIREKFADST IITIAHRLHT IIDYDRIIVM DAGRIVEDGI PGELLKNRNS QFYGLAKSAK1500
 1501 IVN