YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18878
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	38	0.95
Non-Cytoplasmic	39	71	0.93
Transmembrane Helix	72	94	0.94
Cytoplasmic	95	103	0.83
Transmembrane Helix	104	125	0.92
Non-Cytoplasmic	126	132	0.81
Transmembrane Helix	133	153	0.93
Cytoplasmic	154	166	0.76
Transmembrane Helix	167	189	0.85
Non-Cytoplasmic	190	196	0.81
Transmembrane Helix	197	217	0.90
Cytoplasmic	218	278	0.96
Transmembrane Helix	279	304	0.82
Non-Cytoplasmic	305	315	0.80
Transmembrane Helix	316	336	0.95
Cytoplasmic	337	344	0.89
Transmembrane Helix	345	367	0.93
Non-Cytoplasmic	368	378	0.80
Transmembrane Helix	379	402	0.90
Cytoplasmic	403	415	0.86
Transmembrane Helix	416	436	0.89
Non-Cytoplasmic	437	441	0.79
Transmembrane Helix	442	462	0.94
Cytoplasmic	463	479	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLPLERNL ETPPHLTTRL LATSVVATFA GGFHFGYLIS AVNPLSEILQ QFIVDNLQNR  60
   61 YSYELSSSQL SLIWSSLAGC LFIGAMIGAY ISIFLLQSIG PRNSLLLAAI LQLFSAPVFG 120
  121 LAYSLRLCEL LPISRILSGI AFAIGISAQG VFLTEISPAK FRGLTNSLSG LIGNCAFLLA 180
  181 ATLGTPYVLG TVTQWKYIFF IETIPCVLHI LVNITTFHDS PTYLLSIGKI SEGESAIKVY 240
  241 YGETCHIKKI MEDLRIIDNG VKEKSLRQIL KDKGCAQALS LAVAINFSVA FSGIVAISFF 300
  301 GTFLLQTIGF SPEGSAVANS LCSFASIVSA LLAAIAMDKI GRRPLLITSL LVLALINIFM 360
  361 MSLVFLYDST KDSFLAWPFL ALFVLFTFVF SIGIGPAAVF IGAELAPPGT ISKMQSYSTS 420
  421 VQFAGSFICP IIYLQLVESI GGFAFMLFIV PLTITAAYFY MYLPETKGKS PVEIYGLLQ