YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lin-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKMLLFCIL LLFMPQFTES CLPSWFRQER SAPEQLQSAE NAAENSGSVP PDTSRNSLET  60
   61 NEIGDAPSST STPETPTETT ISEAGDDEKR TEEVAKELIE KEAEYEGEYE DEKVDEEVEE 120
  121 ALKYNEDATQ DATSTLKPAV RKEIEKLKEA KCKDYCHHNA TCHVEVIFRE DRVSAVVPSC 180
  181 HCPQGWEGTR CDRHYVQAFY APINGRYNVR LSTMSSTAQL LVQQSSTSAI PAFAFLIVML 240
  241 IMFITIVVYA YRRMSKRSDD MTYTMSHMCP PEAFNVLKTP NGRHIPVHQI PSCSYTIPTP 300
  301 GTVPPNISST PGSRIPTRQQ AIRNNEQARN NFFSILRSQG TIPSRSINDD DTPKHYKSVP 360
  361 RVEVSAINYS GHIDFSTVSY QSTESEVSKA SVTCPPPAHT VINIELDSAD TNFRSPSRSS 420
  421 GEQGSPATCE PMIRHT

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	228	0.99
Transmembrane Helix	229	251	0.93
Cytoplasmic	252	436	0.99