YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18445
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	65	0.93
Transmembrane Helix	66	88	0.86
Cytoplasmic	89	93	0.79
Transmembrane Helix	94	112	0.92
Non-Cytoplasmic	113	118	0.71
Transmembrane Helix	119	140	0.88
Cytoplasmic	141	154	0.88
Transmembrane Helix	155	177	0.93
Non-Cytoplasmic	178	206	0.94
Transmembrane Helix	207	228	0.93
Cytoplasmic	229	261	0.93
Transmembrane Helix	262	283	0.91
Non-Cytoplasmic	284	298	0.84
Transmembrane Helix	299	321	0.90
Cytoplasmic	322	332	0.85
Transmembrane Helix	333	352	0.94
Non-Cytoplasmic	353	372	0.88
Transmembrane Helix	373	397	0.87
Cytoplasmic	398	408	0.92
Transmembrane Helix	409	427	0.91
Non-Cytoplasmic	428	433	0.63
Transmembrane Helix	434	452	0.94
Cytoplasmic	453	488	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEESLPPSS GSKMSPRAFE LLCVVMLGFG HLCIMTGCDS QAFILESVIN SIHERDPARI  60
   61 NSHAGYYGQA TCYLAFVFTC LVSPTFLYAT SAKTTLIIAA ACFTSFPLGF LYTNQYYYFF 120
  121 SAALNGVGFA LYYTGNGGYL TSHSTRKTIE SNVSISWAIG SSCMIVGAGI IALITFLTAG 180
  181 QGSEVAMDLA NATVTQHFER RFSDTEIYLL FSVFAAISFV GCITFALLPS NDIGNCIESS 240
  241 KKIVAFRDGI ALMYRAFRSP KMIVLIPTFV LTGVHTSFWV SIYPTTLTFN SHLSAMIYLP 300
  301 AIYSFGVGLG ETTMGLLISF CSKRIKNFGM RPTMFIGCFL TCLYCALVVI STPPTAPMAP 360
  361 TSEKPLLFQP TRYLVFIIAL IGGMSDCCLC SVRSVVCAIA MPTRRNQAFS VSKFYQAIGC 420
  421 CVIFFISPLL NIYYYVIGIP ILCIIASVCF FFETRRIKQM EKSLTNMELD QAQQRRRSSK 480
  481 YDTLDEEF