YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18279
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	31	0.95
Non-Cytoplasmic	32	65	0.91
Transmembrane Helix	66	87	0.93
Cytoplasmic	88	92	0.91
Transmembrane Helix	93	114	0.91
Non-Cytoplasmic	115	120	0.74
Transmembrane Helix	121	143	0.85
Cytoplasmic	144	152	0.72
Transmembrane Helix	153	176	0.85
Non-Cytoplasmic	177	185	0.89
Transmembrane Helix	186	205	0.95
Cytoplasmic	206	248	0.97
Transmembrane Helix	249	272	0.90
Non-Cytoplasmic	273	284	0.75
Transmembrane Helix	285	304	0.89
Cytoplasmic	305	318	0.92
Transmembrane Helix	319	340	0.95
Non-Cytoplasmic	341	348	0.76
Transmembrane Helix	349	370	0.91
Cytoplasmic	371	384	0.79
Transmembrane Helix	385	405	0.89
Non-Cytoplasmic	406	412	0.82
Transmembrane Helix	413	435	0.90
Cytoplasmic	436	453	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPWGNYYR WIIVGVGFLC LTSICSNFIV INFTFICMKN DMSDAVTDSN GTLRSIYDYN  60
   61 GSEKKWILWA VALGTMLGTV PINMLYVKYG ARLPFFIAGL TSIISTALIP WAAGFNYWIL 120
  121 ILLRFCQGLA YSADFAAIGL ITVRWAPLTE TATFIAVMTS FTGISSVATN SVTGVICESS 180
  181 YGWKYSYYLH AIVGLLLFVL WYIVYIDHPQ DTKRVSCKEL TKIEKSKSAA HLDKSTDVPY 240
  241 RKLLTSPVIW CVWLNAFFEM SAVIVCSTYM PIYFHEVLKF GVTETGFWVA LVLFIWLPVR 300
  301 WVAAVLSDKI RCIGELPKIL IFNTIAVGGT GAFFAVIGFI PAENKYWSVA AFTMTMCCVG 360
  361 VNSGGFYKCG VLHARQYAHV VIAAIQWTKC VALFSAPAMV ALFVTTESVR TQWIGVFLVF 420
  421 GGLMQITNLL SYCIFTDKPA EWTNSEEKPV SKA