YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18263
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.95
Transmembrane Helix	17	37	0.92
Non-Cytoplasmic	38	65	0.92
Transmembrane Helix	66	87	0.91
Cytoplasmic	88	95	0.84
Transmembrane Helix	96	116	0.93
Non-Cytoplasmic	117	121	0.71
Transmembrane Helix	122	144	0.84
Cytoplasmic	145	154	0.74
Transmembrane Helix	155	177	0.88
Non-Cytoplasmic	178	187	0.82
Transmembrane Helix	188	207	0.96
Cytoplasmic	208	248	0.93
Transmembrane Helix	249	270	0.81
Non-Cytoplasmic	271	285	0.76
Transmembrane Helix	286	304	0.72
Cytoplasmic	305	318	0.75
Transmembrane Helix	319	339	0.94
Non-Cytoplasmic	340	345	0.76
Transmembrane Helix	346	368	0.88
Cytoplasmic	369	377	0.80
Transmembrane Helix	378	401	0.87
Non-Cytoplasmic	402	409	0.82
Transmembrane Helix	410	432	0.88
Cytoplasmic	433	455	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLEEKRRT FNDKTRFVVL FLGICSIICN HGAYTTISFT VICMQDVIED HHSVNQTHWL  60
   61 ENSADVSFVF TAGAIGAIAG LIPSVPLTTK YGIRNVLAFY SCSSSIATLL MPLAVSFGYF 120
  121 PVIIARVIQG FGASILFSSI GSISEGWSPI AEISTYIAFL SAGFQLSNII TMPLSGILCE 180
  181 SSLGWRSIYY LYGGVAFLVT TAFFAFFRDS AQVHRNVSVK ELEKISAGKT VTSGRKSVPY 240
  241 LAVCKNKVIL AVWSSALGGN MSLMTLMIYG PTYLNKVLQL DVKDTGFANA IPYIMATAVK 300
  301 FTAGPLSDKL TRIPDTWKMI FFAAVSQLGM AMGFFVMALT RSKFIAQIAY TGAIVLAGVN 360
  361 MIGVVKCAQM VSRQYTHFVM AVNSLISWIA ILILPMIIGV LCPNHSPEEW AVFYTSGGIW 420
  421 VIIMNIPFPF LVTTEAADFT KPGVGEKKVK DIESC