YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE18262
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	70	0.95
Transmembrane Helix	71	92	0.91
Cytoplasmic	93	100	0.85
Transmembrane Helix	101	122	0.91
Non-Cytoplasmic	123	127	0.70
Transmembrane Helix	128	149	0.86
Cytoplasmic	150	159	0.74
Transmembrane Helix	160	182	0.90
Non-Cytoplasmic	183	191	0.80
Transmembrane Helix	192	212	0.95
Cytoplasmic	213	253	0.97
Transmembrane Helix	254	275	0.89
Non-Cytoplasmic	276	290	0.84
Transmembrane Helix	291	309	0.83
Cytoplasmic	310	323	0.70
Transmembrane Helix	324	344	0.94
Non-Cytoplasmic	345	350	0.79
Transmembrane Helix	351	373	0.89
Cytoplasmic	374	380	0.89
Transmembrane Helix	381	405	0.89
Non-Cytoplasmic	406	414	0.82
Transmembrane Helix	415	437	0.89
Cytoplasmic	438	462	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVEEQQTN QKRFTFADKT RFIVLIIGLC CICCTNANYN AINFSVICMQ DVISEQSVVN  60
   61 QTHWLENTAD VSFIFSAGAA GAIIGLFPSV PLTTKFGVRN VLSFYGLLTA VSTLLIPLAV 120
  121 SIGYYPVIII RMFQGFGASI LFSAIGSISE GWSPIAEIST YVAFLSAGFQ ISSIILMPVS 180
  181 GVLCESQLGW RYIFYLFGGI SVIAHIIFFT FFRDSATVHR NVSGKELRKI STGRLPTAGR 240
  241 QTVPYLDICK DKVVLSIWAA AIGGNMSFMA LITYGPTYLN KVLGLDARET GFLNAIPYML 300
  301 ATAVKFVAGP LSDHMTFIPE TWRMIFFAAL SQLGLAIGFF VMALTNSKLI AQIAYTAAIV 360
  361 LAGINIVGVV KCAQMVARQH VHFVMAVISL SAWGAIFLLP IIIGFVCPNH TASEWAVFYT 420
  421 AVGIWVIIMN VPFPFFATMD AAEYTKPEWE QKKNTVAPEQ RI