YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-15
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.62
Transmembrane Helix	33	52	0.78
Non-Cytoplasmic	53	262	0.78
Transmembrane Helix	263	283	0.88
Cytoplasmic	284	294	0.72
Transmembrane Helix	295	317	0.91
Non-Cytoplasmic	318	323	0.74
Transmembrane Helix	324	345	0.85
Cytoplasmic	346	364	0.85
Transmembrane Helix	365	384	0.90
Non-Cytoplasmic	385	389	0.71
Transmembrane Helix	390	413	0.81
Cytoplasmic	414	472	0.93
Transmembrane Helix	473	491	0.84
Non-Cytoplasmic	492	676	0.90
Transmembrane Helix	677	697	0.91
Cytoplasmic	698	702	0.72
Transmembrane Helix	703	724	0.91
Non-Cytoplasmic	725	732	0.73
Transmembrane Helix	733	752	0.73
Cytoplasmic	753	771	0.68
Transmembrane Helix	772	794	0.89
Non-Cytoplasmic	795	804	0.56
Transmembrane Helix	805	825	0.90
Cytoplasmic	826	840	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLRIRNPSG ILQEYLAHLF YQYGLFIYDR PRFFTLGPLI LTIIFSFGIL NMRTEDDLRF  60
   61 LYSPEHSLSR EEYQVHKDFS GDSKNNSFVS ITIQTSSEDK NLLKKDLAQK LIQLNKYVLE 120
  121 KMEIQVDGKI INFGKEVCSR MKQCELSNTI ATIFLDTFWS EKLRKDPRIK IEYPTMKFFD 180
  181 NKFFLPTHFY GVQPGGPLGI ESIDMVHFVY QIPAYNEHTS EEMSKIFEQS LTALLENQTT 240
  241 FDTSMFSLSI LKDEMQKNST YTMPFISLTI LLLLCFTVAS CMTDNWVTSK PIEAMIGILV 300
  301 SSMAIVSAGG LLFALGVPFI NQVTVMPFIA LAIGVDDVYV MLGAWQDTRR TLDAKKRMGL 360
  361 ALEEAGSAIT VTSLTSVLSF GIGTYSTTPA IAIFCKFIAL AIMFDWFYQL TFFAAVMAMG 420
  421 AKREAAGYHC VFVWKRCDRE EIAKAKNENA ISPTRYFFEN IFAPFICRPS VRFCMLNLYV 480
  481 VYIAIAFYGC SQLTPNLTPS QLVVDDSPLV PYLNLAEKKI WAEGLIGRIY VNNAPDFSKN 540
  541 PEMVDRMLQM VNELESTPYS MGPNSTNFWL NEFNNYRQFF FQEDAKFYET LKSFLKVSFN 600
  601 SHWETDLVWD TPDKSSKGGT KVEKFVFTTA FKISNWNIRT SLLLTWRNIT SSYPEFDALV 660
  661 FDENNFYSDQ MLELQSTILS SLGTAIILLS AICIMFIAES YIVFWVVCTL ISMDIGTAGL 720
  721 LSLWGADLDP MTVVNILMSI GQCIDFATHV GIRIYRSEYS DPDERIRDAM GAIGWPVVQA 780
  781 GTSTLLAIVV MLMVPSSAVR MFARTSVLVV GTGFFHGLII LPIIVRSFAT NAKALAPSNH 840
  841