YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-11
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.45
Transmembrane Helix	13	39	0.77
Non-Cytoplasmic	40	239	0.53
Transmembrane Helix	240	260	0.89
Cytoplasmic	261	267	0.51
Transmembrane Helix	268	292	0.84
Non-Cytoplasmic	293	297	0.49
Transmembrane Helix	298	320	0.80
Cytoplasmic	321	338	0.65
Transmembrane Helix	339	363	0.81
Non-Cytoplasmic	364	370	0.52
Transmembrane Helix	371	397	0.70
Cytoplasmic	398	432	0.62
Transmembrane Helix	433	453	0.65
Non-Cytoplasmic	454	635	0.55
Transmembrane Helix	636	660	0.83
Cytoplasmic	661	664	0.51
Transmembrane Helix	665	688	0.85
Non-Cytoplasmic	689	697	0.52
Transmembrane Helix	698	717	0.63
Cytoplasmic	718	737	0.74
Transmembrane Helix	738	760	0.85
Non-Cytoplasmic	761	766	0.60
Transmembrane Helix	767	789	0.90
Cytoplasmic	790	820	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWDVISAVV ARLLAAYPVY SILLSILSIL VLSSGLVHIR LEPDIRKAFS PDDSDAGYET  60
   61 RVWLEYYGLD IYPERAFCIF TAKRENSSIL QEGALADIYT VDNRLSAAVG YQDGDGRKNC 120
  121 DPLCDLNSPF HLLANLTRRN NGTTSVFTYP DMPYSGLDIF LGLHLSNADF EPPTERISSK 180
  181 SLVLWYFSRS DTPEGKLAFK DAIDELFQLS KNSSAFEHVQ FTIFSDQVAN REMIRGAIEA 240
  241 TTLMTIGFFL LLTQVIIVIV RLSSVKMAFY LVATSLLTPM AATVASFGAI CWMGFPSFSI 300
  301 QCVTPFLVLG IGVDDAFILL HRWKHHIAIT DTPRRLEQVI VDVGPSITIT SLTNIIAFGI 360
  361 GFLTPTPQMS LFCLTASLAL LLDYIFTYTI LAPIVFLCND PDYKSIANET EPKISRADTW 420
  421 LSKYSSFVCS VKGRVACIMV LLGMYALTTY GVVTMKTTFE PAKAFPSNSK LVDSLSNIKP 480
  481 VFNRYFPITV IVNNPPNIEI KAEYDSFNNM MDRLEHVPGI RGDNRSLIFL PQYVNFDKTM 540
  541 NILSTLVGEK YRPSYDNLPT WMDAIGNPPL VKYHMGDDNK TIVTAFRLTL LGKGMSEWAE 600
  601 RARAMQHIRT ILHEESQFNA TLFDCDSAIL SIILTVGTDL IGSIAVTVVC MAIVCFVFIA 660
  661 NFNAVAVITS VIASICYVLV GGLSLWGADL DPVIQVDVLL ATGFSVDYTA HVAYNFFRAR 720
  721 GTPQERVYSS LAEMAMPMCE AGLSTFLCML PLIFVPTYAI VCFAKTVFLV VAIGLLHGLF 780
  781 ILPVILALFS KDSINEKDNI PAAITFSAAE PLVDKDLNAV