YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENKLQLVE RRQHPLISGQ GRESSGYHHA AVVEVGAMVL QNMFSALSFL HYRKDDDFVD  60
   61 RLSYFYTSSF LIMMAVLVSF KQFGGRPLEC WVPAQFTASW EAYTEMYCWA QNTYWVPIDQ 120
  121 DIPVDISERE YRQISYYQWV PFFLLLQAFL YYIPCLMWRL MSDKSGIRLN DIVQMATEKE 180
  181 NIEPDYRIRT IESLSRHIES ALRYQHTATS RTQYTLHRVF KCFNMRYYES YVTGMYLATK 240
  241 IMYVGNILTN LVLVNKFLET DEYSIYGLGV LRDLLFGRTW IESGNFPRVT LCDFEVRVLG 300
  301 NNQRHSVQCV LVINIFNEKI FILIWLWFTL LFVASTLDML YWFSISMFHR DRFRFVLRHL 360
  361 ELTSDPDKPE LFRKEKRKQV EHFLRTYLKV DGVLVLRMIA LHAGVMFCTE ITDALWKRYL 420
  421 SQHPENLIDD DSSLITFARA QSIRRKRNDS SNSDGQNHQR LGRILSHRST GGSFRLNRTQ 480
  481 STNRSLNTEN KTGAATGSNA AASPNTPPPV PNSRFGKVKP RRTVVTINSQ QNDARTSPDP 540
  541 IQEMSRMENV PLAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.63
Transmembrane Helix	28	50	0.62
Cytoplasmic	51	61	0.80
Transmembrane Helix	62	83	0.87
Non-Cytoplasmic	84	138	0.89
Transmembrane Helix	139	160	0.85
Cytoplasmic	161	322	0.82
Transmembrane Helix	323	345	0.92
Non-Cytoplasmic	346	554	0.71