YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cab-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYTFSDEKK ATTTTTSRAK SQARLLNSAS YRRAARTTLR HSYGMGMWRA VALLACLSAT  60
   61 HAALFTEGGA VQNGKDNKAN KYVEFAHDDK INKEDLLKYY GKEVEQYKDD DSYMEYLIEY 120
  121 MKSHPVPAQF PNFEQEAEQE HQDELNQWLE QLMNEQELLE PANAAVKDAE QKAPLAPVHH 180
  181 KQVAQKPAQE PFDLDDLLRG ELMLENEIAK ESELKKTQEK LSEQTPSAKA NVESLESAMQ 240
  241 TATGEPQVPQ KKGQNEFVSF VEQEPQPAKQ TISSQTVDKR RLATSAEYSG SAPRYSSSSL 300
  301 LLLAVGTVMC VGLIGTVAGG TYYYKNNRRT ETPDDGEYAP YAGTGPGFRK NKGNKGDETL 360
  361 AYKAQLHQYQ QAKQKIICGE DAPGIIESDG EDGADEENNY SVYECPGLAP TGDIEVCNPN 420
  421 FAAQP

Type	Start	End	Confidence
Signal Peptide	1	62	0.79
N-region	1	53
H-region	54	59
C-region	60	62
Cleavage Site	62	63
Non-Cytoplasmic	63	299	0.98
Transmembrane Helix	300	323	0.86
Cytoplasmic	324	425	0.92