YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-24
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYGMPEGSY DSVFTYAPYN DLDKMGYMGP ARQGMMLGNK YGNFTYTRDY GVNMEDDIKP  60
   61 LSAIELLIFC VSFLFVVMTM PLSLLFALKF ISTSEKLVVL RLGRAQKTRG PGITLVIPCI 120
  121 DTTHKVTMSI TAFNVPPLQI ITTDRGLVEL GATVFLKIRD PIAAVCGVQD RNASVRTLAN 180
  181 TMLYRYISKK RICDVTSSQD RRIISANLKD ELGSFTCQFG VEITDVEISD VKIVKEGENM 240
  241 GMSALSSVAK SDAGQQLWQV IGPVFEDFAK ECAAEEKAKE NAPLVDLSDV PSTSAAGTST 300
  301 DTPNIPSIDI DHLISVASLA MDEHLVRLIG RVFQINCKDI EPICIDLKHG SGSAYKGTSL 360
  361 NPDVVFETSL EVFGKILTKE VSPVTVYMNG NLKVKGSIQD AMQLKHLVER MSDWL

Type	Start	End	Confidence
Cytoplasmic	1	65	0.93
Transmembrane Helix	66	88	0.89
Non-Cytoplasmic	89	415	0.97