YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE17005
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	62	0.93
Non-Cytoplasmic	63	72	0.76
Transmembrane Helix	73	94	0.92
Cytoplasmic	95	100	0.73
Transmembrane Helix	101	122	0.91
Non-Cytoplasmic	123	129	0.82
Transmembrane Helix	130	152	0.91
Cytoplasmic	153	160	0.79
Transmembrane Helix	161	181	0.92
Non-Cytoplasmic	182	221	0.92
Transmembrane Helix	222	243	0.92
Cytoplasmic	244	257	0.79
Transmembrane Helix	258	277	0.65
Non-Cytoplasmic	278	291	0.57
Transmembrane Helix	292	313	0.93
Cytoplasmic	314	320	0.51
Transmembrane Helix	321	341	0.85
Non-Cytoplasmic	342	346	0.52
Transmembrane Helix	347	366	0.43
Cytoplasmic	367	378	0.73
Transmembrane Helix	379	401	0.71
Non-Cytoplasmic	402	414	0.69
Transmembrane Helix	415	435	0.92
Cytoplasmic	436	452	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMNTLTLNF TVICMDDIVE DFHMFHNSTE THWFERSTEK SLLFSGVAIG GLIGLVPSVP  60
   61 QISSIGLRNT QTISGFISGL GSFLFPLAVS VGFYTSFLCR VLQGIGAAVL FTAVGVVPGV 120
  121 WAPKSEANTF MSILACAFQL SNVICMPVSG LLCESAVGWR SIYYISGAIT FVLYTVFWFT 180
  181 YTDDPKLHRN VSQKELRKIS TGKVEKIKEP VPYFAVSTDP TVIISWISLF GGNMGFYVLC 240
  241 IYGPTYLREV LKFDVKETGF LTALPFILSA IAKFSAGRIS DKLTGLSERA RFVFFASIFQ 300
  301 IGLVAGLVVM AFTTNRVIAQ IAFNFAIVSS GLNIMGVVKF ADLPKNLIFV NLPICQFAGS 360
  361 FREILYKIET LKVRCLQHVH YTLTVMSFTA YASQFLSPTL VSIICPNYTN EQWKTFFLVI 420
  421 SGLIVACNAG FPFLARSDAA GYTKKQEPTV KC