YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lact-9
Protein type:	Globular with Signal Peptide
Type Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWYTSCPKM LLGATAVAVP LGATVFRRES EKSENLLKIK KAKELVETTM AIQGIPGLSI  60
   61 AVSLDGKMVW KSGFGYANLE SFAKCTGDSV MRIASISKPI TATLAAQCVE NGTLDLDEDI 120
  121 RKYLPEFPAK KFKNEDVKIT MRQLLSHSAG IRHYATEKKK SETHEDPSNN NTETPEFLSN 180
  181 KPYNSSLDAL AIFKNDDLVE KPGSKFSYTT YGLTLAGAVL EKCSGKTYRQ LANQLFSDLG 240
  241 MRNTQLDTKE KIVPGRASYY QRNSKNILEN CPEVDCSNKF AGGGIISNTT DLLIIANAIL 300
  301 HSILSDSKNC LLQRETIRKF LEKQVPVDSK TSTGLGWFLV DGKDLKSIDG NISNSSFFYH 360
  361 TGAAVGASSV LLVNTSSGVC VAILCNLQNT TVLKLGRDIG DLFHGEI

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	407	0.95