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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pmp-4
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQSKFLET GIDPEKRKKA LLVGAAGVAA VAVAHWVSLR KSQKSHHKME KEDSVASDGT  60
   61 PKKNKKKAFD PQFLKQLKEL LKIMIPGVFS KEAGIIGMHS IILICRTFLT IFVAQLEGSM 120
  121 VQAIVEKNVL QFVLHLVKWI LVALPATFVN SMIRFFESYL GLAFRTRLTK HAYKQYFSDQ 180
  181 TYYAVSNLDT RLQNADQCLT EDITMFSQSV AHLYSHLTKP VLDVALITFT LIKLAIQRGT 240
  241 GRSTFLPSCM AIMAVSLTAK ILRAVSPRFG HMVAEEARRK GHLRYLHSRI ITNSEEIAFY 300
  301 GGHQAEYKQL DGAFNSLYQQ MMLIFKKRIP YIMIEQFLMK YVWSGTGMVM IALPILATEY 360
  361 ADDEKSTKLE DLPDRGVSER TRGYATAKTL LFNSADAVER LMTSYKEVTE LAGYTGRVHE 420
  421 MFQVFDDAKK GIYQRQTVSA GAEQGQRGER FDTSKIEGII TDSEADEIIL NSVPIVTPNG 480
  481 DVVVKNMTLT ISPGMHVLIT GPNGCGKSSL FRILGGLWPV YRGHLEKPTS DRMYYIPQRP 540
  541 YMTLGTLRDQ VIYPDTTIQM RRQGITDQDL MTMLRIVHLE HIVEREGGWD AQNDWMDVLS 600
  601 GGEKQRMGMA RVFYHRPKYA LLDECTSAVS IDVEGSIYQA IKDSGITLLT VTHRPSLWKF 660
  661 HTHLLQYDGE GGYKVSSLNE KTIGERMSYS EEKQQLEKQL AEVPRWKERL EEVCQLLGGN 720
  721 EDHLNMTIDT DDSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle