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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7503488
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSPVRNFNR SFIMSGGSST CKLVSGGADK LIFKFKSFNN NFAPAPADAT DARAQSWKLS  60
   61 RVDYNEFVDH NKKATKIQHY IVRDAKGGRK RTMLRSDHNR HCQVSLRMRV CVCVCVCVFF 120
  121 RAGMLARLEE LRDEALSAVI LKFQCSLRHY LAQLEYKRRL DREDAYPIIQ ENIRAWIKLR 180
  181 SWPWYRLFSR LKPMLKGMKS NAEIEALEKK CKELEENHKR EEEARKKYAD ELRAKIDQYE 240
  241 ETKAAHERDR MLLDKRNKEI EELNRNLKAE SESNYENAKK ASELERLREK EKKEWDEKER 300
  301 RMQMEAENEA NQHKTQTEKL KDQISTLQTD FEKVSAQRKA QEQMNAELVD EVASFKQKAE 360
  361 RAEEQKKKLV EDLDSLDDKL AAEKRANNEH VKHNKKLEGQ LKATQTQLTL ALKEKHEFDV 420
  421 DCKRRESEIG ELKLKAQGDA NLISKLQAML RKCISRIEEL EEDLLEERKL RMKAERQFNE 480
  481 LRSEYEVLQE QMAEASGQLT AEAHINKVRA EEVSNLRRDL QKRNLNHEAY ISDLCNMQYA 540
  541 TVNNLRNLSQ QFYSFNFNCF FFLFLFFSFS IYDKPIHLFQ IRKIIKSPVT VIFHELISRE 600
  601 SVPTVASLCI YAQTIIFNGA SLNFEISFLI FIIFFSFLFN SSQFNIKSMG ISGLLPFVKN 660
  661 ACRKGNILEL RGKSVAIDVS CLLHRGLTGC MDKIHMGEET QSYVNYVNKY VKELLGMGCH 720
  721 VVMVFDGRPL PAKKGTNEER RELREKRKEH AEMLLAKGLE REARDTYRLA TSISADIVEN 780
  781 TIQYFRSMTN VDIVVAPYEA DAQLAYLVQE KLVDAVITED SDLIVFGCEM IYFKWQSATG 840
  841 ECSVYEKCNL KNCFTGELGG DKFDFVKFRR ICILSGCDYL QAGLPGVGLS TAAKFFSMTS 900
  901 IKDLRTLLRK VPSYLKNPKL KEHVNDEFIR NFEKAENTFK HQIVFDPRER CQKPLTPYPK 960
  961 EVLMTGVDDL EEVIDLDSPK KTAPSSKSFA YAGTASTQRI AIRLALGNPE NKSSIDDQFL1020
 1021 LVQPTPEWSV WGLRYESKGS TLDKISKQKE LEATQCGGAF KLDSPSVKRV KVASKTTPND1080
 1081 DEDDIVKQFM ADIEKEKKAI KKRKNAPQVD YNADVLLKKY AEPPPEKRQK ILEVIDDDFS1140
 1141 EFFQEKVKEN TKESVAEEKV ENSNEELKPP PILRKAVSTP DSARKTHKFQ SPLLNHQNSA1200
 1201 PPSLPDRKPA QTSKYFSKPT SENGVPKTKN PFRCPAFVKP TQKVEEKIEK TTILAALEEN1260
 1261 SVPMPSSNTT YRFVGFKSAG LRRKSKQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle