YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15903
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDCNWTNPL CNTSLLLASG YALWSCASKK NKKETKTETK KSHDCPPQTI EPVKDEKNSN  60
   61 SEEKKTTSSN NEVPPQKKLI GNDEVKKEKK KSEDDLLDVK KTASKEDDKK RMDKKDPSKK 120
  121 LSKEKLREEK KEQSKKVNKE KKMNKSESVD EDNEQPPEPG SDPRKIWAFK AAKMKCQAIS 180
  181 KLHQDKIKGY MPPNCTYTAY DANPDLNRYA DVRCIEETRV VLKNHDRDYI HASWMRMPGK 240
  241 DQSTYITTQG PLPETLSDFW HMIYQEKIAY VLMLCTLFEG GVEKCALYYP EKLGEVVKFG 300
  301 KYEITLTECK EEAIAGTIWN ALTVTNTEDA SSEPLYMNHV QVPWWPDQLA PEDARPMIEL 360
  361 YKWVKKVNPK ETPICVHCSA GVGRTATFVG IDYATIRIME NPNIEMLDIV REMRAMRFQA 420
  421 VQSHMQFLFL YVVLMEYFIG EGVVERTGRV DTFMTQYKKH AQKKLAKRAA QNQQGEKLAA 480
  481 EEKEKDKVKV

Type	Start	End	Confidence
Signal Peptide	1	27	0.61
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	490	0.97