YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15787
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	49	0.79
Non-Cytoplasmic	50	110	0.95
Transmembrane Helix	111	131	0.94
Cytoplasmic	132	138	0.90
Transmembrane Helix	139	160	0.94
Non-Cytoplasmic	161	167	0.76
Transmembrane Helix	168	187	0.93
Cytoplasmic	188	196	0.81
Transmembrane Helix	197	220	0.88
Non-Cytoplasmic	221	230	0.80
Transmembrane Helix	231	250	0.96
Cytoplasmic	251	307	0.93
Transmembrane Helix	308	327	0.86
Non-Cytoplasmic	328	344	0.84
Transmembrane Helix	345	364	0.87
Cytoplasmic	365	380	0.84
Transmembrane Helix	381	400	0.95
Non-Cytoplasmic	401	406	0.75
Transmembrane Helix	407	427	0.93
Cytoplasmic	428	440	0.81
Transmembrane Helix	441	465	0.85
Non-Cytoplasmic	466	471	0.96
Transmembrane Helix	472	494	0.89
Cytoplasmic	495	537	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGFSVSRKL SQAQQVPDQD LNFHHKTRFI ILVICTLCLS IAQSDTLTLN FTIICMSGDG  60
   61 APVSNRSALT NLENMEMTLV NASGSLTDNV ENMEHKIADG RYNYSPSEKS LLFSLVAVGA 120
  121 MVAVYPVMLL IQKFGSRSIV FWVGMLSTVS TALIPWMAYI GFWPLLVMRF FQGAGLSTSF 180
  181 TLIGIVTRQW SMQVQSAFYI AVLTTFFQIG PIFTMPVAGA LCTSSLGWPA VYYIHAVVTF 240
  241 GLFVLFYFFY RFRTHILLGH FIKFQKNSRE NPVRHALVST KELEKIQRGK GDGKREAVPI 300
  301 KAILTDPVIW SIWISAIGNF MGIQLTMQFS PTYLNKVMGF AVEQTGTFSA IPQIVTFFLK 360
  361 VIAGYAADKA RCCTPQTSVK IYNNLALGGM SLSFLGLAVI PVSEPVLGLC MLIFSCSIIG 420
  421 FNCGAFFRSS AIYAAQHNHF IMGVNSFLNC LAALLAPVIV NIFVANDTWD EWWWVWMVHF 480
  481 VTLFVFNIVF QIYGKGVPAE WSKPGFGRSN VIGDVVVSVP KTTEVPVRDG VVPEDKI