YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE15552
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	53	0.92
Transmembrane Helix	54	77	0.84
Cytoplasmic	78	149	0.94
Transmembrane Helix	150	172	0.68
Non-Cytoplasmic	173	195	0.74
Transmembrane Helix	196	218	0.91
Cytoplasmic	219	230	0.88
Transmembrane Helix	231	253	0.90
Non-Cytoplasmic	254	268	0.83
Transmembrane Helix	269	288	0.95
Cytoplasmic	289	376	0.89
Transmembrane Helix	377	391	0.59
Non-Cytoplasmic	392	407	0.56
Transmembrane Helix	408	429	0.88
Cytoplasmic	430	439	0.60
Transmembrane Helix	440	460	0.73
Non-Cytoplasmic	461	465	0.43
Transmembrane Helix	466	485	0.72
Cytoplasmic	486	496	0.81
Transmembrane Helix	497	519	0.94
Non-Cytoplasmic	520	523	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILLQYAP NWTEHATWLV IVAFIFAFFV SYGMGANDSC NDWGPAVGAG TVTLPQAYFL  60
   61 SGILNVAGAV LLGYKVIETL RTGIIEFDIF DVYAQYNETT HQYDTVDHCG NATLIGGWKA 120
  121 PDILPGAEPL ECAKYTSIDF MLTQTASLAG VAAFMILSSC FKIPVSATHA IVGASVATSF 180
  181 YIRGNVGIKW GEIINIVVSW FISPIIAGTI AATMYYIIKY SVLIRQDTFK WALRLCPIFM 240
  241 CFTLVVNLYA CIYDGSKYLG LDRLDAIEAF LISVAIGVTG WAILTFPLRN WLPNRAHRLY 300
  301 DKETVKMQRR MEAGKATKSH KIKDMREPDV ADNIKELPWY KYLWAYVPED RLTKKVFNTL 360
  361 QIISSSMLSF THGANDTGNT IAPLLAIWLC YESGYAFGNA ETRDDTQMLL AYGSLAMIVG 420
  421 FVTLGHRTIK LLAHEMTVDM SPISGFCIEV GTAFTVLICV KFGIPISSTH CTVGAVVFVG 480
  481 MAKSTSEGVS FGTFRKICFF WLLCFPMSAI IGIGATIILQ QFL