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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lin-15B
Protein type: Globular with Signal Peptide
Type Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLKTARLT SNPASIPTSS SSSAISAAAI QKTLDAVNRP PAVRASGILR HRTLPAPTQE  60
   61 TAHHLDADPK TTELMARFFI SQGIPFECAH EPAFLELMKH VDPNCVIPPT NVTKKLVDKI 120
  121 STSSKPQVNY TKTVGPLSVT IDICGDEDEK YLAFSIHYFE DLYERKNAIY LRKLLLTELD 180
  181 SNSLLTNIRR SVNSYSFSNV KFTNIVCPNE EICKLVEESA VVKRYNVCFY NYVTRFVADL 240
  241 MEIEEFSSGL TQLRTFVRYM KQNSDMYSKF RRMQLQKNAE LDIPSIDSGD WHSTAIFLTR 300
  301 CLVWHDTFTE FCGKLDILHY IDNETFNHLI YLQRLLQQCM KHCRELSIPN NSISQVVPAI 360
  361 MSIRNFIASN SMGYRFQKRI RDSFTTSFKE ITSGPSQDRY DIATLLDPRF AYRDTVYTAQ 420
  421 TWRSLEKKVI DDFVNSDLQN DKNFYQDISI LNQEQRYDII KKEFAYYRQT SFVERPEENE 480
  481 NSNHWWGMRQ TDMEFLAVIA REYLASPAVS IDAGYYFGNG GKFQHICHTY SHQRLENCLA 540
  541 LAGNYQTFRG KGASVDVISQ SMIETLNNTA SRLQKQVHLG LYAHGVDNIS SDRDVQSIVG 600
  601 HHYPPMPTVA NYDIPHVPKE EEKPPVANLQ STSSPATSSP TIIRPRAAPP PRTLAQGRPI 660
  661 PLNGKELKAV PIRQIPLQVR PLPPRPANVP IVPRPTVPQQ FIKAPAPKPI TLQAVVCSIP 720
  721 EKEIKKETED VALLEKIKDE PLDEDDFNHP STDPVPNRTT ASSQGPSSYP RKIVVLASKL 780
  781 PTSQSSSPST ATSAQARSHV TTAQLIRCGP SEGTVPQKIH SHNFVQKFAQ KQNFVHKYAL 840
  841 NSQDHTGRLN QTVPMRAALR LPNSEQKSGA PSSINGKVQR DDFKLEPLDD FNGEPDYDNL 900
  901 IGAQRLMYSD NLNDASAEDA FARHRVTMEF QKRRACNRRC AVCGHLEIHE RLKNVTIENE 960
  961 KLLIMLGCIY RGEFTLGQAQ LFMARESKTY ICRLHFLETL DEIYQMLRLK SADDILICPL1020
 1021 DLIQNALITV SALRPHIIAS QLRKILHDFA ERNNHLRETP AELKKLGQQY FDYREPEPEP1080
 1081 ERNDVDEQEI IPKLFRQPRK QVLEADQHDG TVKVIEQEDF KLPTVKPSEN EECDNPGVCC1140
 1141 FCSKRGDRGG MLRVPRSEER LARWVDKLGP EFEARLHTNT ENLICRSHFP DAAFSSRGRL1200
 1201 LKGMIPDAAP EKVETTYIIQ GNNFLKLKER KSGTDKNSAI DLANMLNPDG VEYTQEEEEE1260
 1261 EEYEEMSRSP TEETSDDEPS QAAVYNNAPV IKRTYRKREL SNEDGPLNLV TPPAHTPNPR1320
 1321 GRPRKYPKNS VTPEAEKSLT DYDYNPGTSQ RRALKKGYVQ LEDGEIVGED CEYVPEKTPS1380
 1381 GRLIRQAVAR RSFAFADEEE EEEEYEESPI VKKPKIAGRP VGRPRKDANK LPTPTPPSNE1440
 1441 

YRC Informatics Platform - Version 3.0
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