YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	toc-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFSWVSRS LHHPQGKRGL ISTLICLACV GILAYCVSTS HSIVLMSTLW ITIFSFCSQF  60
   61 ASLYSMSITE KPTHKFSYGL ARVPVLAVFS TTVLAQLFSI FLSKESFEHL LSPDHHGSHD 120
  121 ASAAHEHEVE EIGGWPYFVG SAASSVALLL SAYALKNQPF QHVLQSATAS SLQEHAADLS 180
  181 HAVCWVIPGL SRLLLPRINS MVLLALTTTG LNLLCEHFKH DFAWADPVCC LLLSVAVFST 240
  241 MYPLSTYTGM ILLQTTPPHL INQIDRCISE ASHIDGVLEL KSGRFWQLDF NSLVGTVDVR 300
  301 VRRDADEQNV LAHVTEKFSS VITVLTVQVV KDAAWSAGEQ VPYSNGHIHK SEGNHSHDNG 360
  361 HGHSHDHNDH GHSHGHDDHG HDSHGHSHDH NEHDHGHSHG GNNDNHGHSH SAGSDNHHGH 420
  421 SHDGVFYH

Type	Start	End	Confidence
Cytoplasmic	1	18	0.95
Transmembrane Helix	19	39	0.92
Non-Cytoplasmic	40	45	0.67
Transmembrane Helix	46	68	0.86
Cytoplasmic	69	77	0.93
Transmembrane Helix	78	102	0.85
Non-Cytoplasmic	103	133	0.93
Transmembrane Helix	134	155	0.82
Cytoplasmic	156	194	0.78
Transmembrane Helix	195	215	0.64
Non-Cytoplasmic	216	222	0.58
Transmembrane Helix	223	244	0.78
Cytoplasmic	245	428	0.64