YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE14970
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.80
Transmembrane Helix	15	36	0.86
Non-Cytoplasmic	37	105	0.88
Transmembrane Helix	106	127	0.80
Cytoplasmic	128	135	0.77
Transmembrane Helix	136	154	0.96
Non-Cytoplasmic	155	160	0.76
Transmembrane Helix	161	182	0.93
Cytoplasmic	183	199	0.72
Transmembrane Helix	200	214	0.64
Non-Cytoplasmic	215	218	0.58
Transmembrane Helix	219	239	0.72
Cytoplasmic	240	292	0.95
Transmembrane Helix	293	315	0.84
Non-Cytoplasmic	316	325	0.88
Transmembrane Helix	326	345	0.95
Cytoplasmic	346	357	0.81
Transmembrane Helix	358	379	0.92
Non-Cytoplasmic	380	387	0.82
Transmembrane Helix	388	410	0.83
Cytoplasmic	411	419	0.77
Transmembrane Helix	420	440	0.83
Non-Cytoplasmic	441	449	0.71
Transmembrane Helix	450	470	0.94
Cytoplasmic	471	532	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCIKVIKGA WRLDIGLMIL YQMTLFFSVQ MLFVIFLEYM PKTHCTEDRY CYKLKNKCMS  60
   61 DFDRHSDSDV CPFASTNFDQ CVVAANKTDF YSAQYEYQQD CTGLKYFSSS TSTFLGTLVG 120
  121 NLILGYLSDT IGRRPVYIFS ILLGVPSVIL SAALNDVMSF YIFRFLVGFA IAGTLTVGWT 180
  181 YASEMVIPSR RFRLRTFPNW ANARMMQVGV SWLAGEWRLA SYLCAALSAT VLPMIWYLPE 240
  241 SPVFLEQKKK YKRAERSREK IAGICQLEYE PKAREEMQDL KKITPIKLLK SPVLRTNFLV 300
  301 LCWMWFYVGM SVYITDLNSG DMAENFYVGQ FLCGLVLTVS KIMIGILEPK IPWLGRRCLF 360
  361 ISSQIIAILA YITILTALWT RNKVSWWYTV AYILAYAGQS LCLETCYLSL AELMPTDVRT 420
  421 ISGALMNILM KIGTILASTT KPIKFWYEPL LFIINTIICT GGLIIVWKYL PESKNMNMQL 480
  481 VGQDDIDEDE DDDSNKTEKP SEIPSEATKS VKTSTEATEM ESEVETEKSS TS