YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	39	0.98
Non-Cytoplasmic	40	61	0.85
Transmembrane Helix	62	82	0.90
Cytoplasmic	83	93	0.92
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	188	0.94
Transmembrane Helix	189	209	0.88
Cytoplasmic	210	224	0.82
Transmembrane Helix	225	247	0.84
Non-Cytoplasmic	248	263	0.84
Transmembrane Helix	264	288	0.88
Cytoplasmic	289	299	0.79
Transmembrane Helix	300	320	0.64
Non-Cytoplasmic	321	341	0.58
Transmembrane Helix	342	361	0.42
Cytoplasmic	362	368	0.51
Transmembrane Helix	369	391	0.77
Non-Cytoplasmic	392	395	0.45
Transmembrane Helix	396	419	0.74
Cytoplasmic	420	491	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIASKKSVS RWTSWLTKNM LLLMTMAGIV MGVIIGGVLR TADPSPDVIR YVGFPGELFM  60
   61 NMLKAMVLPL IAASIVSGLS QLDGKTSGRL GSRAVMYYAI TTTHAVILGI IVVSIIQPGD 120
  121 PTIKQKMGYD KEGEAANVSA AQKFLDLFRN AFPENIMRAT FSQVQTNYIN QTHSNGATHE 180
  181 VLHTGYVDGM NVLGIIVFCI VMGLVVSRIG EEAKALANLF HALDVVITRM VMLIMWLGPI 240
  241 GIPSLIAQKM LEVSDLWLTA RMLGLFVFTV ILGLAIQAFI TLPLIYFIGT RHNPYTFLKG 300
  301 LGQAIMTALG TSSSAASLPV TFRCLNKLGI DPRVTKFVLP VGAMVNMDGT ALYEATASIF 360
  361 IAQMNGLELS IGQIVTVSIT ATLASIGAAS IPSAGLVTML IVLTALGLPA NDISLILAVD 420
  421 WFLDRLRTSV NVIGDALGCG FVHHICADHL NADVAEAEKN HAVVEAHGVN FDELEKECEQ 480
  481 ENNNQKQIEQ V